Locus 2125

Sequence ID 2R_DroMel_CAF1
Location 7,953,741 – 7,953,837
Length 96
Max. P 0.999723
window3525

overview

Window 5

Location 7,953,741 – 7,953,837
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 96.86
Mean single sequence MFE -20.32
Consensus MFE -18.78
Energy contribution -19.18
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.65
Structure conservation index 0.92
SVM decision value 3.95
SVM RNA-class probability 0.999723
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7953741 96 + 20766785
ACUCCGCGCAGCCCAACAAAAAGUGACGUAUUAAAAAAGGUUGCUAAUUACAAAAGGUAAACAACAAAUAAUGUGCGGAUUAUAUUACCAAAUUCC
..((((((((...........((..((.(........).))..))..((((.....))))...........))))))))................. ( -19.10)
>DroSec_CAF1 5472 95 + 1
ACUCCGCGCAGCCCAACAAAAAGUGACGUAUUAAA-AAGGUUGCUAAUUACAAAAGGUAAACAACAAAUACUGUGCGGAUUCUAUUACCAAAUUCC
..(((((((((..........((..((.(......-.).))..))..((((.....))))..........)))))))))................. ( -21.20)
>DroSim_CAF1 5475 95 + 1
ACUCCGCGCAGCCCAACAAAAAGUGACGUAUUAAA-AAGGUUGCUAAUUACAAAAGGUAAACAACAAAUACUGUGCGGAUUCUAUUACCGAAUUCC
..(((((((((..........((..((.(......-.).))..))..((((.....))))..........)))))))))................. ( -21.20)
>DroEre_CAF1 5579 95 + 1
ACUCCGCGCAGCCCAACAAAAAGUGACGCAUUAAA-AAGGUUGCUAAUUACAAAAGGUAAACAACAAAUACUGUGCGGAUUCUAUUACCAAAUUCC
..(((((((((..........((..((.(......-..)))..))..((((.....))))..........)))))))))................. ( -21.00)
>DroYak_CAF1 5607 95 + 1
ACUCCGCGCAGCCCAACAAAAAGUGACGCAUUAAA-GAGGUUGCUAAUUACAAAAGGUAAACAACAAAUACUGUGCGGUUUCUAUUACCAAAUUCC
...((((((((..........((..((.(......-..)))..))..((((.....))))..........)))))))).................. ( -19.10)
>consensus
ACUCCGCGCAGCCCAACAAAAAGUGACGUAUUAAA_AAGGUUGCUAAUUACAAAAGGUAAACAACAAAUACUGUGCGGAUUCUAUUACCAAAUUCC
..(((((((((..........((..((............))..))..((((.....))))..........)))))))))................. (-18.78 = -19.18 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:01 2006