Locus 212

Sequence ID 2R_DroMel_CAF1
Location 1,509,851 – 1,509,952
Length 101
Max. P 0.980980
window479

overview

Window 9

Location 1,509,851 – 1,509,952
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 91.29
Mean single sequence MFE -27.02
Consensus MFE -21.82
Energy contribution -22.26
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -2.29
Structure conservation index 0.81
SVM decision value 1.88
SVM RNA-class probability 0.980980
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1509851 101 - 20766785
UUUUGAUUGGCAAUCUGUUCCUAACUAGACUGCUAAUAAGUUGGGUAGCAAAUAUCAGACAACUGGUAUUGGUUCUGGGGAAAAUCAAUCAACAACAAUGG
..((((((((...(((((((((((((............))))))).))).((((((((....))))))))........)))...))))))))......... ( -23.50)
>DroSec_CAF1 40879 101 - 1
UUUUGAUUGGCAAUCUGUCCCUAACUAGACUGCUAAUAAGUUGGGUAGCCAGUAUCAGACAACUGGUACUGGUUCUGGGGAAAAUCAAUCAACAACAAAGG
..((((((((.......(((((((((.((((.......)))).)))((((((((((((....)))))))))))).))))))...))))))))......... ( -35.00)
>DroSim_CAF1 45178 101 - 1
UUUUGAUUGGCAAUCUGUCCCUAACUAGACUGCUAAUAAGUUGGGUAGCCAGUAUCAGACAACUGGUACUGGUUCUGGGGAAAAUCAAUCAACAACAAAGG
..((((((((.......(((((((((.((((.......)))).)))((((((((((((....)))))))))))).))))))...))))))))......... ( -35.00)
>DroEre_CAF1 49520 101 - 1
UUUUUAUUGGCAAUAUGGCCCUAACUGGAUUGCUAAUAAGUUCUGUAGCCAAUAUCAGACAACUGGUAUUCGUUCUGGGGAAAAUCAGUCAACAAAAAAAG
(((((.(((((.......(((((((.(((((.......))))).))(((.((((((((....)))))))).))).))))).......))))).)))))... ( -23.24)
>DroYak_CAF1 64802 101 - 1
UUUUGAUUAGCAAUCUGUCCCUAACUAGACUGCUCAUAAGUUGUAUAGCCCAUAUCAGACAACUGGUAUUCGUUCUGGGGAAAAUCAAUCAACAACAAAGG
(((((((.((((.((((........)))).)))).))..((((.....((((((((((....)))))))........))).........))))..))))). ( -18.34)
>consensus
UUUUGAUUGGCAAUCUGUCCCUAACUAGACUGCUAAUAAGUUGGGUAGCCAAUAUCAGACAACUGGUAUUGGUUCUGGGGAAAAUCAAUCAACAACAAAGG
..((((((((.......(((((((((.((((.......)))).)))(((.((((((((....)))))))).))).))))))...))))))))......... (-21.82 = -22.26 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:35 2006