| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,919,275 – 7,919,387 |
| Length | 112 |
| Max. P | 0.500000 |
| Location | 7,919,275 – 7,919,387 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.41 |
| Mean single sequence MFE | -45.43 |
| Consensus MFE | -29.24 |
| Energy contribution | -28.25 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.08 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7919275 112 - 20766785 UGUUGGACUCCUGGCUGAUGAUGGCGAUGGGCUCCUCCGCCUUUUGGGGGGCAGCCUGGCAGCAGCUCAUCAAGGCGGUGGCCAGCAGACAGAGAGCAAACUGUCGAG-GGCA---- ((((((.(..(((.(((((((..((..((((((.((((.((....)))))).))))))...))...))))).)).)))..)))))))(((((........)))))...-....---- ( -48.60) >DroPse_CAF1 14375 115 - 1 UGUUGGACUCCUGGCUGAUGAUCGCAAUGGGCUCCUCGGCCCGCUGCGGUGCCGCCUCAACCAGGCACAUCAGCGCCGUGGCGACCAGGCACAAAACGAACUGCA-AA-GGGAAGAC ........((((.(((((((((((((.((((((....)))))).))))))...((((.....)))).)))))))(((.(((...))))))...............-..-)))).... ( -45.70) >DroSim_CAF1 17317 112 - 1 UGUUGGACUCCUGGCUGAUGAUGGCGAUGGGCUCCUCCGCCUUUUGGGGAGCAGCCUGGCAGCAGCUCAUCAAGGCGGUGGCCAGCAGACAGAGAGCAAACUGUCGAA-GGCA---- ((((((.(..(((.(((((((..((..((((((.((((.((....)))))).))))))...))...))))).)).)))..)))))))(((((........)))))...-....---- ( -49.50) >DroEre_CAF1 16298 112 - 1 UGUUGGACUCCUGGCUGAUGAUGGCGAUGGGCUCCUCCGCUUUUUGGGGGGCAGCCUGGCAGCAGCUCAUCAAGGCGAUGGCCAGCAGACAGAGAGCAAACUGUCGAA-GGGA---- ((((((.((..((.(((((((..((..(((((((((((........))))).))))))...))...))))).)).))..))))))))(((((........)))))...-....---- ( -44.50) >DroAna_CAF1 15510 113 - 1 UAUUGGACUCCUGGCUGAUGAUGGCGAUGGGCUCGUCGGCCUUUUGGGGAGCAGCCUGGCAGCAGCUCAUCAAGGCGGUGGCCAAAAGACAGAAAGCAAACUAUCACAGGGGA---- .......((((((((((((((.(.(....).)))))))))(((((((...((.(((((((....))).....)))).))..)))))))..................)))))).---- ( -38.60) >DroPer_CAF1 12227 115 - 1 UGUUGGACUCCUGGCUGAUGAUCGCAAUGGGCUCCUCGGCCCGCUGCGGUGCCGCCUCAACCAGGCACAUCAGCGCCGUGGCGACCAGGCACAAAACGAACUGCA-AA-GGGAAGAC ........((((.(((((((((((((.((((((....)))))).))))))...((((.....)))).)))))))(((.(((...))))))...............-..-)))).... ( -45.70) >consensus UGUUGGACUCCUGGCUGAUGAUGGCGAUGGGCUCCUCCGCCUUUUGGGGAGCAGCCUGGCAGCAGCUCAUCAAGGCGGUGGCCAGCAGACAGAAAGCAAACUGUCGAA_GGGA____ .((..(....)..))...((.((((.((((((......))))((((..((((.((......)).))))..))))...)).)))).))(((((........)))))............ (-29.24 = -28.25 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:40 2006