Locus 2113

Sequence ID 2R_DroMel_CAF1
Location 7,915,778 – 7,915,893
Length 115
Max. P 0.999588
window3501

overview

Window 1

Location 7,915,778 – 7,915,893
Length 115
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 90.93
Mean single sequence MFE -25.92
Consensus MFE -24.84
Energy contribution -25.00
Covariance contribution 0.16
Combinations/Pair 1.16
Mean z-score -2.19
Structure conservation index 0.96
SVM decision value 3.76
SVM RNA-class probability 0.999588
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7915778 115 + 20766785
UAACAUUUGAUCUUGAGCCAAAAAGGAUUUCGGACUUAAAAAGAUU-UUAAAAGCUUUAAGCCAGUCUUUGUGUCACGAA-AAUAUCUUGAACUUUGGCUAGAGAUUAUAAGCCAAA
.......(((((((.(((((((.((((((((((((....(((((((-......((.....)).)))))))..))).))))-...)))))....))))))).)))))))......... ( -29.20)
>DroSec_CAF1 12717 116 + 1
UAACAUUUGAUCUUGAGCCAAAAAGGAUUUCGGACUUAAAAAGAUU-UUAAAAGCUUUAAGUCAGUCUUUGUGUCACGAAAAAUAUCUUGAACUUUGGCUAGAGAUUAUAAGCCAAA
.......(((((((.(((((((.((((((((((((....(((((((-((((.....))))...)))))))..))).))))....)))))....))))))).)))))))......... ( -28.30)
>DroSim_CAF1 13683 116 + 1
UAACAUUUGAUCUUGAGCCAAAAAGGAUUUCGGAUUUAAAACGAUUUUUAAAAGCUUUAAGUCAGUCUUUGUGUCACGAA-AAUAUCUUGAACUUUGGCUAGAGAUUAUAAGCCAAA
.......(((((((.(((((((.((((((((((((.(((((((((((...........))))).)).)))).))).))))-...)))))....))))))).)))))))......... ( -26.40)
>DroEre_CAF1 12470 106 + 1
UAACUUUUGAUCUUGAGCCAAAAAGGAUUUCGGGCUUAAAAAGAUU-UUAAAAGCUUUAAGUCAGUCUCCGUGUCACAAA-AAUAUCUUGAACUUUGGCUAAAGAUUA---------
.......(((((((.(((((((..(((.....((((((((......-........))))))))....)))......(((.-......)))...))))))).)))))))--------- ( -23.34)
>DroYak_CAF1 15329 115 + 1
UAACAUUUGAUCUUGAGCCGAAAAGGAUUUCGGACUUAAAAAGAUU-UUAAAAGCUUUGAGUCAGUCUGUGUGUCACAAA-AAUAUCUUGAACUUUGGUUAAAGAUUACGAGCCAAA
.......(((((((.(((((((.(((((....((((((((......-........))))))))....((((...))))..-...)))))....))))))).)))))))......... ( -22.34)
>consensus
UAACAUUUGAUCUUGAGCCAAAAAGGAUUUCGGACUUAAAAAGAUU_UUAAAAGCUUUAAGUCAGUCUUUGUGUCACGAA_AAUAUCUUGAACUUUGGCUAGAGAUUAUAAGCCAAA
.......(((((((.(((((((.((((((((((((....(((((((.((((.....))))...)))))))..))).))))....)))))....))))))).)))))))......... (-24.84 = -25.00 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:39 2006