Locus 2105

Sequence ID 2R_DroMel_CAF1
Location 7,870,898 – 7,870,997
Length 99
Max. P 0.833240
window3488

overview

Window 8

Location 7,870,898 – 7,870,997
Length 99
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.45
Mean single sequence MFE -23.12
Consensus MFE -19.73
Energy contribution -19.48
Covariance contribution -0.25
Combinations/Pair 1.30
Mean z-score -1.60
Structure conservation index 0.85
SVM decision value 0.72
SVM RNA-class probability 0.833240
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7870898 99 - 20766785
------UAUUUCG-----GAAGUUCUUAAACUCACUGCAAAAUCAAUAUGAAACUUUAAGGGGGUAUUAUCCGCACCGUAGGCAAAGAAUAUUUGAUAUGGCGGUGAGUA
------.....(.-----...).......(((((((((...((((((((....(((...(((((......)).).))..)))......))).)))))...))))))))). ( -23.40)
>DroSec_CAF1 2957 99 - 1
------UUUAUAG-----AAAGUUAUUAAACUUACUGCAAAGUCAAUAUGAAACUUUAAGGGGGAAUUAUCCGAGCCGUAGGCGAAGAAUAUUUGAUAUGGCGGUGAGUA
------.......-----...........(((((((((...((((((((....((((.....(((....)))..(((...))))))).))).)))))...))))))))). ( -23.40)
>DroSim_CAF1 433 99 - 1
------UUUAUAG-----AAAGUUCUUAAACUUACUGCAAAGUCAAUAUGAAACUUUAAGGGGGAAUUAUCCGAGCCGUAGGCAAAGAAUAUUUGAUAUGGCGGUGAGUA
------.......-----...........(((((((((...((((((((....((((.....(((....)))..(((...))))))).))).)))))...))))))))). ( -23.00)
>DroEre_CAF1 434 105 - 1
AUAGAAUAUAGAG-----GAUGUGGUUAAACUCACUGCAAAAUCAAUAUGAAACUUUAAGGGAGAACUAUCAUUGCCAUAGGCGAAGAAUAUUUGAUAUGGCGGUGGGUA
.............-----...........(((((((((...(((((.......(((.....))).....((.(((((...))))).))....)))))...))))))))). ( -23.70)
>DroYak_CAF1 433 99 - 1
------UAUCUAG-----GAGGUGGUGGAACUCACUGCAAAAUCAAUAUGAAACUUUAAGGGAGAACUGUCCUUGCCAUAGGCAAAGAAUAUUUGAUAUGGCGGUGAGUA
------..((((.-----.......))))(((((((((...((((((((....((((.(((((......)))))(((...))))))).))).)))))...))))))))). ( -27.00)
>DroAna_CAF1 433 104 - 1
------CUUAUAAAUUUCAAGGUUUUCCGACCUACCGCAAGAUCAAUGUGAAACUUCAAGGGAGAAUUAUCAUUGCCAUAGGCAAAGAAUAUUUGAUAAGGUGCCGAGUA
------.........(((.(((((....)))))...(((..(((((.......(((.....))).....((.(((((...))))).))....)))))....))).))).. ( -18.20)
>consensus
______UAUAUAG_____AAAGUUCUUAAACUCACUGCAAAAUCAAUAUGAAACUUUAAGGGAGAAUUAUCCGUGCCAUAGGCAAAGAAUAUUUGAUAUGGCGGUGAGUA
.............................(((((((((...((((((((....((((...(((......)))..(((...))))))).))).)))))...))))))))). (-19.73 = -19.48 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:24 2006