Locus 2104

Sequence ID 2R_DroMel_CAF1
Location 7,870,008 – 7,870,106
Length 98
Max. P 0.913503
window3487

overview

Window 7

Location 7,870,008 – 7,870,106
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 80.82
Mean single sequence MFE -24.44
Consensus MFE -17.50
Energy contribution -18.06
Covariance contribution 0.56
Combinations/Pair 1.26
Mean z-score -2.06
Structure conservation index 0.72
SVM decision value 1.09
SVM RNA-class probability 0.913503
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7870008 98 + 20766785
UAACUUGGAUAUACUUGCAGGAUACUAUUGGGUUGUAUUGGUGCAAGUCCUGCAACUAGUGCCCUUCCUGUACUUCUGCUACCUAUUCUACACUUUUC
.....((((.......(((((((((....(((..(((((((((((.....))).)))))))))))....))).)))))).......))))........ ( -25.24)
>DroSim_CAF1 12671 98 + 1
UAACUUGGAUAUACUUGCAGGAUACUAUUGGGUGCUGUUGGUGCAAGUCCUGCAACUAGUGCCCUUCCUGUACUUCUGCUACCUGUUCUACACUUUUC
.....((((.......(((((((((....(((..(((....((((.....))))..)))..))).....))).)))))).......))))........ ( -27.04)
>DroEre_CAF1 14060 98 + 1
UAACUAGUGCAUUAUUGCAGGAUAUUAUUGGGUGCUGAUGGUGCAAGUCCUGCAACUAGUGCCCUUCCUGUACUUUAGCUCCCUCUUCUACACUUUUC
......(.((.....(((((((.......(((..(((....((((.....))))..)))..))).))))))).....)).)................. ( -24.10)
>DroYak_CAF1 12961 98 + 1
UAACUAGUAUUUACGUGCAGGAUACUAUUGGGUGCUGAUGGUGCAGGUCCUGCAACUAGUGCCCUUCCUGUACUUUUGCUACCUCUUCUACACUUUCC
....(((((.....((((((((.......(((..(((....(((((...)))))..)))..))).))))))))...)))))................. ( -30.00)
>DroAna_CAF1 12245 96 + 1
AAA--UGUUUGUCUUUCUAGGAUACCUUUGGGUUUUCGCAGUUCAAAUCCUACAGGUGAUGCCUUUCCUGUACUUCUGCUAUCUGUUCUACACAUUCC
.((--(((...........(((.(((....))).)))((((.........((((((..........))))))...))))............))))).. ( -15.80)
>consensus
UAACUUGUAUAUACUUGCAGGAUACUAUUGGGUGCUGAUGGUGCAAGUCCUGCAACUAGUGCCCUUCCUGUACUUCUGCUACCUCUUCUACACUUUUC
...............(((((((.......((((((((....((((.....))))..)))))))).))))))).......................... (-17.50 = -18.06 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:23 2006