Locus 2101

Sequence ID 2R_DroMel_CAF1
Location 7,861,525 – 7,861,630
Length 105
Max. P 0.924869
window3481

overview

Window 1

Location 7,861,525 – 7,861,630
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.45
Mean single sequence MFE -37.77
Consensus MFE -22.99
Energy contribution -23.60
Covariance contribution 0.61
Combinations/Pair 1.24
Mean z-score -1.77
Structure conservation index 0.61
SVM decision value 1.16
SVM RNA-class probability 0.924869
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7861525 105 - 20766785
AUACGGAUGAUCAGUUCGGUGAGCUGCAACUGCAACUCAA------------CG---CUAUUUCGUGGCAAAUCAAUCAUGCUCUUCAUGGUGGCCACAUCGUCCAAGCACGGAUGCGAC
....(((((((.....((.((((.(((....))).)))).------------))---.......(((((......((((((.....)))))).))))))))))))..(((....)))... ( -33.10)
>DroSec_CAF1 4444 105 - 1
AUGCGGAUGAUCAGUUCGGUGAGCUGCAACUGCAACUCAA------------CG---CCAUUUCGUGGCAUAUCAAUCAUGUUCUUCAUGGUGGCCACAUCGUCCAAGCACGGAUAAGAC
.((((((((((......((((((.(((....))).)))..------------.)---)).....(((((......((((((.....)))))).))))))))))))..))).......... ( -33.40)
>DroSim_CAF1 4649 105 - 1
AUGCGGAUGAUCAGUUCGGUGAGCUGCAACUGCAACUCAA------------CG---CCAUUUCGUGGCAUAUCAAUCAUGUUCUUCAUGGUGGCCACAUCGUCCAAGCACGGAUAAGAC
.((((((((((......((((((.(((....))).)))..------------.)---)).....(((((......((((((.....)))))).))))))))))))..))).......... ( -33.40)
>DroEre_CAF1 5635 117 - 1
AUCCGGAUGAUCAGAUGGGUGAGCUGCUCGUGCAUCUCAAGAGCAUUGGUGUCG---CCAUUUCGUGGCAAAUCGAUCAUGCUCUUCAUGCUGGCCACAUCGUCCGAGCCCGGACGCGAC
...((........(((((((.((((((....)))....((((((((((((...(---((((...)))))..)))))...)))))))...))).))).))))(((((....))))).)).. ( -42.70)
>DroYak_CAF1 4456 117 - 1
AUCCGGAUGAUCAGAUGGGUGAGCUGCACGUGCAGCUCGAGAGCAUUGGUGACG---CCAUUUCGUGGCAAAUCGAUCAUGCUCUUCAUGGUGGCCACAUCGUCCGGGCCCGGACGCGAC
...((........((((((((((((((....)))))))((((((((.(....)(---((((...))))).........)))))))).......))).))))(((((....))))).)).. ( -49.70)
>DroAna_CAF1 3791 120 - 1
AACCGAAUGGCCAAGUGUGAGACUUUUACUUGCACAUCAAUGCCAUCGGGUUCUGUUUCACUGUACGGCAUAUCAAGCAUGCACUUCAUGCUCAUUACAUCGUCCACGCUAGGCUGUGUC
......((((((.((((((.(((................(((((..(((...........)))...)))))....((((((.....)))))).........))))))))).))))))... ( -34.30)
>consensus
AUCCGGAUGAUCAGUUCGGUGAGCUGCAACUGCAACUCAA____________CG___CCAUUUCGUGGCAAAUCAAUCAUGCUCUUCAUGGUGGCCACAUCGUCCAAGCACGGAUGCGAC
....(((((((........((((.(((....))).)))).........................(((((......((((((.....)))))).))))))))))))............... (-22.99 = -23.60 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:17 2006