| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,845,522 – 7,845,621 |
| Length | 99 |
| Max. P | 0.751513 |
| Location | 7,845,522 – 7,845,621 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.36 |
| Mean single sequence MFE | -25.48 |
| Consensus MFE | -19.52 |
| Energy contribution | -18.55 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.751513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7845522 99 + 20766785 GGGGUGCUUCUCUGAGCGCCCUAAGCUUUAUGUUUGAUAAAAGCACUGAAACGGGCUACCAAAGAACUCUAGCAGGUACGUACAUAAACAUCUAA------UAAU (((((((((....)))))))))..(((....((((......(((.(((...))))))......))))...)))......................------.... ( -23.60) >DroGri_CAF1 20252 97 + 1 GGGGCGCCUCACUCAGUGCUCUGAGUUUUAUGUUUGACAAGAGCACCGAGACGGGAUACCAGCGCACUUUAGCGGGU----AAGAGAACUACUACUACAUU---- ((..(.(((..(((.(((((((..(((........))).))))))).)))..))).((((.((........)).)))----)...)..))...........---- ( -27.80) >DroSim_CAF1 2954 95 + 1 GGGGUGCUUCUCUGAGCGCCCUAAGCUUUAUGUUUGAUAAGAGCACUGAAACGGGCUACCAAAAAACAUUAGCAGGU----ACAUCAACAUCUAA------UAAU (((((((((....)))))))))..(((..((((((......(((.(((...))))))......)))))).)))((((----........))))..------.... ( -27.00) >DroEre_CAF1 2943 95 + 1 GGGGCGCUUCUCUGAGCGCCCUAAGCUUUAUGUUUGAUAAGAGCACUGAAACGGGUUACCAAAGAACUCUAGCAGGU----AUGUUAACAUGUUG------UAGU (((((((((....)))))))))..((..((((((.((((...((.(((....(((((.......)))))...)))))----.))))))))))..)------)... ( -28.90) >DroYak_CAF1 2942 95 + 1 GGGGUGCUUCUCUCAGCGCCCUAAGCUUUAUGUUUGAUAAGAGCACUGAAACGGGUUACCAAAGAACCCUUGCAGGU----ACGUUAACAUGUCA------UAUU ((((((((......))))))))......((((((......(.((.(((....(((((.......)))))...)))))----.)...))))))...------.... ( -25.70) >DroAna_CAF1 2935 95 + 1 GGGGUGCAUCGCUAAGCGCUCUUAGCUUUAUGUUUGACAAAAGCACUGAAUCGGGCUACCAGAAGACACUGGCAGGU----AAGUAAACAAUGGA------UAGU (((((((........)))))))..(((((.((.....)))))))..........(((((((......(((.......----.)))......))).------)))) ( -19.90) >consensus GGGGUGCUUCUCUGAGCGCCCUAAGCUUUAUGUUUGAUAAGAGCACUGAAACGGGCUACCAAAGAACUCUAGCAGGU____ACGUAAACAUCUAA______UAAU (((((((........)))))))..(((....((((......(((.(((...))))))......))))...)))................................ (-19.52 = -18.55 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:56 2006