Locus 2089

Sequence ID 2R_DroMel_CAF1
Location 7,842,991 – 7,843,104
Length 113
Max. P 0.544623
window3457

overview

Window 7

Location 7,842,991 – 7,843,104
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.26
Mean single sequence MFE -32.74
Consensus MFE -19.22
Energy contribution -20.70
Covariance contribution 1.48
Combinations/Pair 1.35
Mean z-score -1.47
Structure conservation index 0.59
SVM decision value 0.02
SVM RNA-class probability 0.544623
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7842991 113 + 20766785
AUC-------CACAGAUCCCACGUCUCCAAAUCUGGCUGACAUUGUGGAGCGCAUUGCCGAUGCUGUGACACAUGCCCGCUUUAUGGGCACCGAUCAGUCCUCGGAUGGUGUCACCUUUA
.((-------(((((....)..(((.(((....)))..)))..))))))..(((((...))))).(((((((.((((((.....))))))((((.......))))...)))))))..... ( -38.50)
>DroVir_CAF1 27241 120 + 1
GUUUCUGCAAUUUAGAUCCCACAACACCAAAUCUGGCUGUGAUUGUAGAGAAGAUUGCGUAUGCUGUCACGCACGCCCGAUUUAUGGGCACCGAUCAGUCUUCGGAUAGUGUGACAUUUA
.(((((((((((...........((((((....))).)))))))))))))).....((....))((((((((..(((((.....))))).((((.......))))...)))))))).... ( -37.80)
>DroGri_CAF1 17672 120 + 1
AUUUUUAACCUUCAGAUCCCACGACUCCAAAUCUUGCUGUGAUUGUCGAGAUGAUUGCGGAUGCUGUGACGCACGCCCGCUUUAUGGGAACGGAUCAGUCAUCGGAUAGUGUAACAUUUA
...............((((..((((....((((.......)))))))).(((((((((((.(((......)))...))))....((....))....)))))))))))............. ( -25.40)
>DroWil_CAF1 6804 113 + 1
AUU-------UACAGAUCCCACUACACCAAAUCUUCCGGUAAUUGUCGAACUAAUUGCCGAUGCUGUGACCCAUGCCCGCUUUAUGGGCACAGAUCAGUCCUCGGAUAGCGUGACAUUUA
..(-------(((..((((....((............((((((((......))))))))(((.(((((.((((((.......)))))))))))))).))....))))...))))...... ( -31.00)
>DroMoj_CAF1 12382 112 + 1
--------AAUUUAGAUCCUACAACCCCAAAUCUGGCUGUAAUUGUAGAGAUGAUUGCAGAUGCAGUUACACAUGCCCGUUUUAUGGGCACCGAUCAGUCGUCUGACAGUGUAACAUUUA
--------.......(((((((((..(((....)))......)))))).)))...(((....)))(((((((.(((((((...)))))))..(.((((....))))).)))))))..... ( -31.70)
>DroAna_CAF1 401 116 + 1
AUUUC----UUUUAGAUCCCACCACUCCGAACCUCUCGGAUAUUGUGGAGCGCAUUGCCGACGCCGUUACCCAUGCCCGUUUCAUGGGCACAGAUCAGUCCUCGGACAGUGUAACCUUUA
.....----.........((((...(((((.....)))))....))))...((((((((((.(.(........(((((((...))))))).......).).)))).))))))........ ( -32.06)
>consensus
AUU_______UUCAGAUCCCACAACUCCAAAUCUGGCUGUAAUUGUAGAGAUGAUUGCCGAUGCUGUGACACAUGCCCGCUUUAUGGGCACCGAUCAGUCCUCGGAUAGUGUAACAUUUA
....................................((((((((........)))))))).....(((((((..(((((.....)))))........(((....))).)))))))..... (-19.22 = -20.70 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:54 2006