Locus 2087

Sequence ID 2R_DroMel_CAF1
Location 7,829,425 – 7,829,545
Length 120
Max. P 0.666577
window3455

overview

Window 5

Location 7,829,425 – 7,829,545
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -31.43
Consensus MFE -28.02
Energy contribution -28.47
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.98
Structure conservation index 0.89
SVM decision value 0.28
SVM RNA-class probability 0.666577
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7829425 120 - 20766785
ACCGGUUGAUCAUAACUUCUUCCUCUUGAUAAGUCAUAGGACCUGUCUUCUGGUUGGACAUAGCUUCUACCUGUCGAUAAGUCAUAGGACCUAUCUUCUGGUUGAUCAUAGGAUCCACCU
...(((.((((......((..((....((((.(((....(((.((((..(.(((.(((......))).))).)..)))).)))....))).))))....))..))......)))).))). ( -32.10)
>DroSec_CAF1 42 120 - 1
CCCGGUUGAUCAUAACUUUUUCCUCUUGAUAAGCCAUAGGACCUGUCUUCUGGUUGGUCAUAGCUUCUACCCGUCGAUAAGUCAUAGGACCAAUCUUCUGGUUGAUCAUAGGAUCCACCU
...(((.((((...............((((.(((((.((((....)))).))))).)))).....((.(((.(..(((..(((....)))..)))..).))).))......)))).))). ( -29.50)
>DroSim_CAF1 16904 120 - 1
CCCGGUUGAUCAUAACUUUUUCCUCUUGAUAAGUCAUAGGACCUGUCUUCUGGUUGGUCAUAGCUUCUACCCGUAGAUAAGUCAUAGGACCUAUCUUCUGGUUGAUCAUAGGAUCCACCU
...(((.((((......((..((....((((.(((....(((.(((((.(.(((.(((....)))...))).).))))).)))....))).))))....))..))......)))).))). ( -32.70)
>consensus
CCCGGUUGAUCAUAACUUUUUCCUCUUGAUAAGUCAUAGGACCUGUCUUCUGGUUGGUCAUAGCUUCUACCCGUCGAUAAGUCAUAGGACCUAUCUUCUGGUUGAUCAUAGGAUCCACCU
...(((.((((......((..((....((((.(((....(((.((((..(.(((.((......))...))).)..)))).)))....))).))))....))..))......)))).))). (-28.02 = -28.47 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:52 2006