Locus 2079

Sequence ID 2R_DroMel_CAF1
Location 7,802,043 – 7,802,157
Length 114
Max. P 0.611227
window3444

overview

Window 4

Location 7,802,043 – 7,802,157
Length 114
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.77
Mean single sequence MFE -37.35
Consensus MFE -21.69
Energy contribution -21.58
Covariance contribution -0.11
Combinations/Pair 1.24
Mean z-score -1.76
Structure conservation index 0.58
SVM decision value 0.16
SVM RNA-class probability 0.611227
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7802043 114 - 20766785
AUUCGUUGAGUUUCUUGAGCCAGUGCAUCAGGUUGGCCAAUUUGUUGCGCUUCGGAUGGAUUCUUUCGCAAUCGAGAACUGUUGGCUCAAAGUCCAUAUUUAGCUGGAAUUUGU
.((((((((((..((((((((((((((.((((((....)))))).)))))(((((.((((.....)).)).)))))......)))))).))).....))))))).)))...... ( -32.90)
>DroVir_CAF1 56129 114 - 1
GCUCGUGCAGCUGCCGGAGCCAGUGCAUCAACUGGGCCAAUUUGCUGCGUGCCGUAUUCGUGCGCUCACAGUUGAGAAUACUUGGCUCAAACUCGAAGCUGACAUCCAAUUUGG
....((((((((..(((((((((((..((((((((((......)))(((..(.......)..)))...)))))))...))).)))))).....)).))))).)))......... ( -39.30)
>DroSec_CAF1 53139 114 - 1
AUUCGUUGAGGUUCUUGAGCCAGUGCAUCAGGUUGGCCAAUUUGUUGCGCUUCGGAUGCGUCCUUUCGCAAUCGAGAACGGUUGGCUCAAAGUCCAUAUUUAGCUGGAAUUUGU
.((((((((((...(((((((((((((.((((((....)))))).)))))(((((.((((......)))).)))))......))))))))...))....))))).)))...... ( -37.30)
>DroSim_CAF1 55642 114 - 1
AUUCGUUGAGCUUCUUGAGCCAGUGCAUCAGGUUGGCCAAUUUGUUGCGCUUCGGAUGCGUUCUUUCGCAAUCGAGAACGGUUGGCUCAAAGUCCAUAUUUAGCUGGAAUUUGU
..............(((((((((((((.((((((....)))))).)))))(((((.((((......)))).)))))......))))))))..((((........))))...... ( -36.10)
>DroYak_CAF1 56893 114 - 1
AUUCGUUGAGCUUUUUGAGCCAGUGCAUCAGGUUGGCCAAUUUGGUGCGCUUCGUAUUGGUUCUUUCGCAAUCCAGAACAGUUGGCUCAAAGUCCAUACUCAGCUGGAAUUUAU
.(((((((((..((((((((((((((((((((((....))))))))))))...((.((((............)))).))...))))))))))......)))))).)))...... ( -39.20)
>DroMoj_CAF1 68447 114 - 1
UCUCGUGCAGCUUCCGCAGCCAGUGCAUCAACUGGGCCAAUUUGCUGCGCGCCGUGUUCGUGCGCUCGCAGUUGAGUAUACUUGGCUCAAACUCGAAGCUGAGAUCUAAUUUGC
..((...(((((((...(((((((((.((((((((((......)))((((((.......))))))...)))))))))))...))))).......))))))).)).......... ( -39.30)
>consensus
AUUCGUUGAGCUUCUUGAGCCAGUGCAUCAGGUUGGCCAAUUUGUUGCGCUUCGGAUGCGUUCUUUCGCAAUCGAGAACAGUUGGCUCAAAGUCCAUACUUAGCUGGAAUUUGU
................(((((((((((.((((((....)))))).))))).............(((((....))))).....))))))(((.((((........)))).))).. (-21.69 = -21.58 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:41 2006