Locus 2075

Sequence ID 2R_DroMel_CAF1
Location 7,778,973 – 7,779,071
Length 98
Max. P 0.988376
window3436 window3437

overview

Window 6

Location 7,778,973 – 7,779,071
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 96.60
Mean single sequence MFE -31.03
Consensus MFE -30.52
Energy contribution -30.63
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.67
Structure conservation index 0.98
SVM decision value 1.95
SVM RNA-class probability 0.983814
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7778973 98 + 20766785
UUUGCUCAUGUUGUUGAUUGCAAAUGUCGCCAUUUGAAGACAGGAGGGCUUCAAUUUGCUUUUCAACAGAUUGGGGAUCUGCAUUUCGAUGGGUGUUU
...((((((..((((.....((((((....))))))..))))(.((..((((((((((........))))))))))..)).)......)))))).... ( -25.70)
>DroSec_CAF1 30818 98 + 1
UUUGCUCAUGUUGUUGAUUGCAAAUGUCGCCGUUUGAAGAGAGGAGGGCUUCAAUCUGCUUUUUAGCAGAUUGGGGAUCUGCAUUUCGAUGGGUGUUU
((((((((......)))..)))))...((((..((((((.(.(((...((((((((((((....)))))))))))).))).).))))))..))))... ( -33.70)
>DroSim_CAF1 32194 98 + 1
UUUGCUCAUGUUGUUGAUUGCAAAUGUCGCCGUUUGAAGAGAGGAGGGCUUCAAUCUGCUUUUUAGCAGAUUGGGGAUCUGCAUUUCGAUGGGUGUUU
((((((((......)))..)))))...((((..((((((.(.(((...((((((((((((....)))))))))))).))).).))))))..))))... ( -33.70)
>consensus
UUUGCUCAUGUUGUUGAUUGCAAAUGUCGCCGUUUGAAGAGAGGAGGGCUUCAAUCUGCUUUUUAGCAGAUUGGGGAUCUGCAUUUCGAUGGGUGUUU
((((((((......)))..)))))...((((..((((((...(((...((((((((((((....)))))))))))).)))...))))))..))))... (-30.52 = -30.63 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 7,778,973 – 7,779,071
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 96.60
Mean single sequence MFE -20.57
Consensus MFE -19.91
Energy contribution -20.03
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -3.06
Structure conservation index 0.97
SVM decision value 2.12
SVM RNA-class probability 0.988376
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7778973 98 - 20766785
AAACACCCAUCGAAAUGCAGAUCCCCAAUCUGUUGAAAAGCAAAUUGAAGCCCUCCUGUCUUCAAAUGGCGACAUUUGCAAUCAACAACAUGAGCAAA
...............(((((((.....))))(((((...((((((.(..(((....((....))...)))..)))))))..))))).......))).. ( -18.60)
>DroSec_CAF1 30818 98 - 1
AAACACCCAUCGAAAUGCAGAUCCCCAAUCUGCUAAAAAGCAGAUUGAAGCCCUCCUCUCUUCAAACGGCGACAUUUGCAAUCAACAACAUGAGCAAA
...............(((((((...(((((((((....)))))))))..(((...............)))...))))))).................. ( -21.56)
>DroSim_CAF1 32194 98 - 1
AAACACCCAUCGAAAUGCAGAUCCCCAAUCUGCUAAAAAGCAGAUUGAAGCCCUCCUCUCUUCAAACGGCGACAUUUGCAAUCAACAACAUGAGCAAA
...............(((((((...(((((((((....)))))))))..(((...............)))...))))))).................. ( -21.56)
>consensus
AAACACCCAUCGAAAUGCAGAUCCCCAAUCUGCUAAAAAGCAGAUUGAAGCCCUCCUCUCUUCAAACGGCGACAUUUGCAAUCAACAACAUGAGCAAA
...............(((((((...(((((((((....)))))))))..(((...............)))...))))))).................. (-19.91 = -20.03 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:34 2006