| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,768,745 – 7,768,844 |
| Length | 99 |
| Max. P | 0.522668 |
| Location | 7,768,745 – 7,768,844 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 88.50 |
| Mean single sequence MFE | -30.14 |
| Consensus MFE | -23.56 |
| Energy contribution | -24.40 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7768745 99 + 20766785 GUGCUUUGCAUGGCCAUUUGUUACGUAUACGUGUGCGCAA------GACUCU----CGUUCUCU-CUGCAGACUUGCCUUAUUUGGCUGCAUACUGUAGGGCGCUCUCCC ((((((((((((((.....)))).......((((((((((------((....----.....)))-.)))......(((......))).))))))))))))))))...... ( -28.50) >DroSec_CAF1 20749 100 + 1 GUGCUUUGCAUGGCCAUUUGUUACGUAUACGUGUGCGCAG------GACUCU----CGUUCUCUUUUGCAGACUUGACUUAUUUGACUGCAUACUGUAGGGCGCUCUCCC ((((((((((..(((((.(((.......))).))).))((------(((...----.)))))....(((((.(...........).)))))...))))))))))...... ( -24.80) >DroSim_CAF1 21939 99 + 1 GUGCUUUGCAUGGCCAUUUGUUACGUAUACGUGUGCGCAG------GACUCU----CGUUCUCU-CUGCAGCCUUGCCUUAUUUGGCUGCAUACUGUAGGGCGCUCUCCC ((((((((((..(((((.(((.......))).))).))((------(((...----.)))))..-.(((((((...........)))))))...))))))))))...... ( -32.20) >DroEre_CAF1 23970 105 + 1 AUGCUUUGCAUGGCCAUUUGUUACGUAUACGUAUGCGGAGCAGGAGGACUCU----CGUUCUCU-CUGCAGACAUGCUUUAUUUGGCUGCAUACUGUAAGGCGCUCUCCC ..(((((((((((((((((((((((....)))).)))))((((((((((...----.)))))).-))))..............)))))).....))))))))........ ( -35.20) >DroYak_CAF1 22171 109 + 1 GUGCUUUGCAUGGCCAUUUGUUACGUAUACGUAUGCGGAGCAUACGUUCUCUCUUUCGUUCUCU-CUGCAGACUUGCCUUAUUUGGCUGCAUACUGUUAGGCGCUCUCCC ((((((.(((((((((..((.((((....))))(((((((...(((..........)))...))-))))).........))..)))))).....))).))))))...... ( -30.00) >consensus GUGCUUUGCAUGGCCAUUUGUUACGUAUACGUGUGCGCAG______GACUCU____CGUUCUCU_CUGCAGACUUGCCUUAUUUGGCUGCAUACUGUAGGGCGCUCUCCC ((((((((((((((.....)))).......((((((((((......(((........))).....))))......(((......))).))))))))))))))))...... (-23.56 = -24.40 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:30 2006