Locus 2071

Sequence ID 2R_DroMel_CAF1
Location 7,766,761 – 7,766,858
Length 97
Max. P 0.527808
window3431

overview

Window 1

Location 7,766,761 – 7,766,858
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 85.35
Mean single sequence MFE -19.13
Consensus MFE -12.45
Energy contribution -12.57
Covariance contribution 0.12
Combinations/Pair 1.26
Mean z-score -1.83
Structure conservation index 0.65
SVM decision value -0.01
SVM RNA-class probability 0.527808
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7766761 97 - 20766785
CCUAAAUGGGGGCCGUUGCAGAAAUGCCAAAGUAAUUACAUACUUAAUACAUACAAAUAAUAUCCAAUUACAGGCAUUUUUGUAUUAGCUAUUAAGU
(((....)))(((...((((((((((((.(((((......)))))............((((.....))))..))))))))))))...)))....... ( -22.60)
>DroSec_CAF1 18766 97 - 1
CUUAAAUGGGGGCCGUGACAGAAUUGCCAAAGUAAUUACAUAGUUAAUACUUACAAAAAAUAUCCAAUUACAGACAUUUUUGUAUUAGCUAUUAAGA
(((((.....(((.((......)).)))............((((((((((.....((((((.((........)).))))))))))))))))))))). ( -17.00)
>DroSim_CAF1 19957 97 - 1
CUUAAAUGGAGGCCGUGACAGAAUUGCCAAAGUAAUUACAUAGUUAAUACUUACAAAAAAUAUCCAAUUACAGACAUUUUUGUAUUAGCUAUUAAGA
(((((.....(((.((......)).)))............((((((((((.....((((((.((........)).))))))))))))))))))))). ( -17.20)
>DroEre_CAF1 21958 96 - 1
CCUAUC-GGAGGUCGUGGCAGAAAUGCUAAAGUAAUUACGUAUUUAAUACUUAUAAAUAGUAUCCAAUUACAAGCAUUUUUGCAUUAGCUUUUAAGA
....(.-.(((((....(((((((((((...((((((((.((((((.......)))))))))....))))).)))))))))))....)))))..).. ( -22.80)
>DroYak_CAF1 20215 96 - 1
CUUAUA-GCGACCCGUAGCAGCAAUGCGAAAGUAAUUACGUAUUUAAUACUUACAAAUAAUAUCCAAUUACAAGCAUUUUUGCAUUGGCUUUCAAGA
......-..((.(((..((((.(((((....((((((..(((((..............)))))..))))))..))))).))))..)))...)).... ( -16.04)
>consensus
CUUAAAUGGGGGCCGUGGCAGAAAUGCCAAAGUAAUUACAUAGUUAAUACUUACAAAUAAUAUCCAAUUACAGGCAUUUUUGUAUUAGCUAUUAAGA
..........(((....(((((((((((...((((((..(((..................)))..)))))).)))))))))))....)))....... (-12.45 = -12.57 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:29 2006