| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,766,136 – 7,766,242 |
| Length | 106 |
| Max. P | 0.919942 |
| Location | 7,766,136 – 7,766,242 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 65.77 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -8.90 |
| Energy contribution | -9.68 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.38 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7766136 106 + 20766785 -------GUACUUUACUUAAAAUACAAUUUCGCUGGCAUUUUGUAUCGAGUUUUAUUUUCGACUGUAUCGCAAACAAGAUGAGAAACCUGAUAUAGGGCUCUCCCACAGCGAC -------(((.(((....))).)))....((((((..(((((((.(((((.......))))).((.....)).)))))))((((..((((...))))..))))...)))))). ( -24.90) >DroSec_CAF1 18146 100 + 1 UAUAUGUAU-----ACUUAAAAUACAAUUUUGCU--------GUAUCCAGUUUUAUUUUCGACUGUAUCGCAAACAAGAUGCGAAACCUGAUAAAGGUUUCUCCCGCAGCGAC ....(((((-----.......)))))...(((((--------((....((((........))))(((((........)))))(((((((.....)))))))....))))))). ( -25.40) >DroSim_CAF1 19332 105 + 1 UAUAUGUAUAUUUUACUUAAAAUACAAUUUCGCU--------GUAUACAGUUUUAUUUUCGACUGUAUCGCAAACAAGAUGCGAAACCUGAUAAAGGUUUCUCCCGCAGCGAC ....(((((.((......)).)))))...(((((--------((((((((((........)))))))).(((.......)))(((((((.....)))))))....))))))). ( -30.10) >DroEre_CAF1 21327 109 + 1 UAUAA----CUUUUAACAAAAAUAUACUUUCCCUGACAUUUUGUAUAGAGUUUUGUGUUUGACUGUAUCUUUAACAAGAUGAAAAACCUGAUGAAGGUUUCUCCCACAGCGAC .....----......((((((.(((((...............)))))...))))))..(((.(((((((((....)))))((.((((((.....)))))).))..))))))). ( -19.46) >DroYak_CAF1 19599 100 + 1 UAUAA----CAUUUACCUAAAACAUAAUUUUGCUGGCAUUUUGGUUCGAGUAUUAUUUUUGACUGUACCGCAAAC---------AACCUGAUAAAGGUUGCUCCCACAGCGAC .....----....................((((((((....(((((.(((......))).)))))....))...(---------(((((.....))))))......)))))). ( -19.00) >DroAna_CAF1 16900 104 + 1 UUUAUCGAUAUUUUAACGAUCUUAAACAU-CAAAGACUACU-AA-------AAUAAGCUUCACUGUACUUAAGACGGAGGGGGAAUCCUGAUAAAGGUUUCUCCUACGGCGAC ....((..(((((((....((((......-..))))....)-))-------)))).(((...((((.......)))).(((((((.(((.....))).)))))))..))))). ( -21.40) >consensus UAUAU__AUAUUUUACCUAAAAUACAAUUUCGCUG_CAUUU_GUAUCGAGUUUUAUUUUCGACUGUAUCGCAAACAAGAUGAGAAACCUGAUAAAGGUUUCUCCCACAGCGAC ..........................................................(((.(((((((........)))..(((((((.....)))))))....))))))). ( -8.90 = -9.68 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:28 2006