Locus 207

Sequence ID 2R_DroMel_CAF1
Location 1,496,718 – 1,496,821
Length 103
Max. P 0.998577
window470 window471

overview

Window 0

Location 1,496,718 – 1,496,821
Length 103
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 72.59
Mean single sequence MFE -33.03
Consensus MFE -16.11
Energy contribution -18.34
Covariance contribution 2.23
Combinations/Pair 1.17
Mean z-score -4.80
Structure conservation index 0.49
SVM decision value 3.15
SVM RNA-class probability 0.998577
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1496718 103 + 20766785
CUAGGGAGUCCA-----GCCCAAAGCAAACUUUAUAGUCUACCUAGCGUCCACAUGCUUAACGCCUUUUGUAAAUGGAGUUUUGUUAAGCUCCAUUUCCGUUCCAAAA
...((((.....-----((...(((((.......(((.....))).........)))))...)).....(.(((((((((((....))))))))))).).)))).... ( -21.19)
>DroSec_CAF1 28016 105 + 1
CUAGAAA-UCCAUGGACGUCCAUAGCAAACUCUAUAGUCUGCGUAGCGUCCACAUGCUUAACGCA--AUGGAAAUGGAGUUUUGUUUAGCUCCAUUUCUGUUCUAAAA
.(((((.-....(((((((.....(((.(((....))).)))...)))))))..(((.....)))--..((((((((((((......)))))))))))).)))))... ( -35.50)
>DroSim_CAF1 32076 87 + 1
CUAGAAA-ACCAUGGACUUCCACAUGGAA------------------GUCCACAUGGUUAACGCA--AUGGAAAUGGAGUUUUGUUAAGCUCCAUUUCCGUUCCAAAA
......(-(((((((((((((....))))------------------)))))..)))))...(.(--(((((((((((((((....)))))))))))))))).).... ( -42.40)
>consensus
CUAGAAA_UCCAUGGACGUCCAAAGCAAACU_UAUAGUCU_C_UAGCGUCCACAUGCUUAACGCA__AUGGAAAUGGAGUUUUGUUAAGCUCCAUUUCCGUUCCAAAA
...(((......(((((((..........................))))))).................(((((((((((((....))))))))))))).)))..... (-16.11 = -18.34 +   2.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 1,496,718 – 1,496,821
Length 103
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 72.59
Mean single sequence MFE -32.97
Consensus MFE -14.30
Energy contribution -19.13
Covariance contribution 4.84
Combinations/Pair 1.07
Mean z-score -3.74
Structure conservation index 0.43
SVM decision value 1.78
SVM RNA-class probability 0.976923
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1496718 103 - 20766785
UUUUGGAACGGAAAUGGAGCUUAACAAAACUCCAUUUACAAAAGGCGUUAAGCAUGUGGACGCUAGGUAGACUAUAAAGUUUGCUUUGGGC-----UGGACUCCCUAG
....(((.(((((((((((.((....)).)))))))).((((.((((((.........))))))..(((((((....)))))))))))..)-----))...))).... ( -25.90)
>DroSec_CAF1 28016 105 - 1
UUUUAGAACAGAAAUGGAGCUAAACAAAACUCCAUUUCCAU--UGCGUUAAGCAUGUGGACGCUACGCAGACUAUAGAGUUUGCUAUGGACGUCCAUGGA-UUUCUAG
...(((((..(((((((((..........)))))))))...--(((.....))).((((((((((.(((((((....)))))))..))).)))))))...-.))))). ( -35.90)
>DroSim_CAF1 32076 87 - 1
UUUUGGAACGGAAAUGGAGCUUAACAAAACUCCAUUUCCAU--UGCGUUAACCAUGUGGAC------------------UUCCAUGUGGAAGUCCAUGGU-UUUCUAG
...(((((.((((((((((.((....)).))))))))))..--......(((((..(((((------------------((((....)))))))))))))-)))))). ( -37.10)
>consensus
UUUUGGAACGGAAAUGGAGCUUAACAAAACUCCAUUUCCAU__UGCGUUAAGCAUGUGGACGCUA_G_AGACUAUA_AGUUUGCUAUGGACGUCCAUGGA_UUUCUAG
...(((((.((((((((((..........))))))))))................(((((((....(((((((....)))))))......))))))).....))))). (-14.30 = -19.13 +   4.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:27 2006