| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,753,126 – 7,753,229 |
| Length | 103 |
| Max. P | 0.959531 |
| Location | 7,753,126 – 7,753,229 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 64.99 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -10.43 |
| Energy contribution | -10.67 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.41 |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.959531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7753126 103 - 20766785 ---------------UUUUC-CCCCAAAACGAAAGUGUUUCGAGCGCUUAAAGC-GCGGCUAAUACUUAGCCCACACAGAUUCGAAAAACACAAAAUUUGUGUAAUUAUUUUUUUUUUUC ---------------.....-....((((.(((((((((((((((((.....))-))(((((.....))))).........)))))).(((((.....)))))...))))))).)))).. ( -25.00) >DroVir_CAF1 44552 107 - 1 UUGGGGCGUUCGCCGUUUUGCCUCUUGAAUGAAAGUGCUUGGAGCACUUAAAAUUGUGAGUGCUAGUUUAACU----AAAAUUG---AACACACAAUUUGUGUAAUUAUUU------UGC ..((((((..........))))))..((((((((((((.....)))))).((((((((.((..((((((....----.))))))---.)).))))))))......))))))------... ( -26.30) >DroSim_CAF1 50459 94 - 1 ---------------UUUUC-CCCCAAAACGAAAGUGUUUCGAGCGCUUA-AGC-GCGGCUAAUACUUAGCCCACACAGAUUUGAAA--CACACAAUUUGUGUAAUUAUUU------UUC ---------------.....-.......((....))(((((((((((...-.))-))(((((.....))))).........))))))--)((((.....))))........------... ( -25.30) >consensus _______________UUUUC_CCCCAAAACGAAAGUGUUUCGAGCGCUUAAAGC_GCGGCUAAUACUUAGCCCACACAGAUUUGAAAAACACACAAUUUGUGUAAUUAUUU______UUC .............................(((((((((.....))))))........(((((.....))))).........)))....(((((.....)))))................. (-10.43 = -10.67 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:20 2006