| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,746,570 – 7,746,689 |
| Length | 119 |
| Max. P | 0.980597 |
| Location | 7,746,570 – 7,746,689 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 71.10 |
| Mean single sequence MFE | -35.77 |
| Consensus MFE | -22.53 |
| Energy contribution | -23.87 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.980597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7746570 119 + 20766785 CCCAACCCCAAUAUAGGUACAUAUGCACUAUUUGGACCCAUUCAGAGGCUCUGGAGCCAGAGCAAUUUGCCGCUUUUAAUGGCGAACGUCGUUUUGGGACUUGGGCAGCACACGUUGCC .((((..((((.(((((((....))).)))))))).((((....((.((((((....))))))..(((((((.......)))))))..))....))))..))))(((((....))))). ( -40.20) >DroSec_CAF1 36562 115 + 1 CCCAAC----AUAUAGAUACAUAUGCACUAUUUGGCCCCAUUCAGAGGCUCUGGAGCCAGAGCAAUUUGCCGCUCUUAAUGGCGAACGUCGUUUUGGGACUUGGGCAGCACACGUUGCC ((((((----((((......)))))........(((...........((((((....))))))..(((((((.......))))))).)))...))))).....((((((....)))))) ( -35.00) >DroAna_CAF1 28059 93 + 1 UC--------AUAGACG-----------UAUUUGCCCCCAUUUUGG-----UGGCUCCAGAGCAAUUUGCCGCUUUUAGUGGCAGCAAGCAUGCUGAGAAUU--GCAGCACACGCUGCC ((--------.(((.((-----------(.(((((..(((((..((-----((((.............))))))...)))))..))))).)))))).))...--(((((....))))). ( -32.12) >consensus CCCAAC____AUAUAGGUACAUAUGCACUAUUUGGCCCCAUUCAGAGGCUCUGGAGCCAGAGCAAUUUGCCGCUUUUAAUGGCGAACGUCGUUUUGGGACUUGGGCAGCACACGUUGCC ....................................((((.......((((((....))))))...((((((.......)))))).........)))).....((((((....)))))) (-22.53 = -23.87 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:19 2006