| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,713,668 – 7,713,788 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 7,713,668 – 7,713,788 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.39 |
| Mean single sequence MFE | -36.70 |
| Consensus MFE | -15.23 |
| Energy contribution | -14.45 |
| Covariance contribution | -0.78 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.41 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7713668 120 - 20766785 CGGACACACGUUUCAGCGUAGCCACUCCAGCAAUCACAGAGCUGAGCAAGCUCUGUACAAUGCUGGAUUUCAGCAACCCAGCGGUGACUGCCCCGUUGUACACUCUGUUCGCUGGCAACC .........(((((((((.(((...(((((((...((((((((.....))))))))....))))))).....(((((...(((....).))...))))).......))))))))).))). ( -42.80) >DroVir_CAF1 4191 120 - 1 CCGACACACGCUUUGGCGUAGCCACGCCUGCCAUUGCCGAGCUGAGCAAAUUAUGCACCAUGCUGGACUUUACUAGUCCAGCUGUUACUUCAGCUCUGUACACACUGUUCAUUGGCAAUC .........((...(((((....))))).)).((((((((((((((((.....)))..((.((((((((.....)))))))))).....)))))))((.((.....)).))..)))))). ( -44.70) >DroPse_CAF1 3800 120 - 1 CAGAUACUCGCUUCAGUGUAGCGACGCCGGCCAUAGCUGAGCUAAGCAAGCUGUGCACUAUGCUGGACUUCAGUAAUCCAGCCGUCACGGCUCCCCUCUACACCCUCUUCAUUGGUAAUC ...............((((((.(..((((((....)))).))......(((((((.((...((((((.........)))))).)))))))))...).))))))((........))..... ( -33.30) >DroWil_CAF1 3838 120 - 1 CGGACACCCGCUUCAGCGUAGCUACGCCAGCUAUCACAGAAUUGAGCAAAGUUUGCACUAUGCUGGAUUUUCAACAGCCAGUUGUGACCGCUCCAUUGUACACCCUUUACAUUGGUAACC (((....)))....(((((((((.....)))))((((((((((.((((.(((....))).)))).)))))).(((.....))))))).))))(((.((((.......)))).)))..... ( -28.60) >DroMoj_CAF1 3991 120 - 1 CUGAUACGCGUUUCAGCGUGGCCACGCCUGCCAUUGCUGAGUUGAGUAAAUUGUGCACCAUGCUGGAUUUUAGUAACCCAGCUGUGACAUCUCCUCUCUACACGCUCUUCAUUGGCAAUC .....((((......))))(((...)))(((((.((..((((.(((.....(((.(((...(((((.((.....)).))))).))))))......))).....))))..)).)))))... ( -35.50) >DroAna_CAF1 3688 120 - 1 CAGAUACUCGCUUCAGUGUAGCCACUCCAGCGAUCGCGGAGUUGAGCAAACUUUGCACUAUGCUGGACUUUAGCAACCCCGCAGUUACGGCUCCUCUGUAUACCCUCUUUGCUGGGAACC .............(((.(.((((..(((((((...((((((((.....))))))))....))))))).....((......))......)))).).)))....(((........))).... ( -35.30) >consensus CAGACACACGCUUCAGCGUAGCCACGCCAGCCAUCGCAGAGCUGAGCAAACUGUGCACUAUGCUGGACUUUAGUAACCCAGCUGUGACGGCUCCUCUGUACACCCUCUUCAUUGGCAACC ........(((....))).......(((((.....((..((((.....))))..)).....(((((...........))))).............................))))).... (-15.23 = -14.45 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:50 2006