Locus 2043

Sequence ID 2R_DroMel_CAF1
Location 7,689,124 – 7,689,235
Length 111
Max. P 0.755596
window3386

overview

Window 6

Location 7,689,124 – 7,689,235
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 87.24
Mean single sequence MFE -24.62
Consensus MFE -16.80
Energy contribution -17.43
Covariance contribution 0.63
Combinations/Pair 1.20
Mean z-score -2.08
Structure conservation index 0.68
SVM decision value 0.49
SVM RNA-class probability 0.755596
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7689124 111 - 20766785
AGUUUUCUCUAUUCUUUGUUUACUUGUUUCUCUUCCAUCGGAAAUGGCAUUUGGUAAUUUUGCUUUAUGCGAUCCAAUUGGGAAGAUACUCGUUAACAACUGGUAUUUCUU
.........((((..(((((.((..((.(((.(((((..(((..(.((((..((((....))))..)))).))))...)))))))).))..)).)))))..))))...... ( -24.10)
>DroSec_CAF1 8046 109 - 1
UGUUUUCGCUAUUCUUUGUUUACCUGUUUCUUUUCCAUCGGAAAUGGCAUUUUG-AAUAUUGCUUUA-GCAAUCCAAUUGGGAAGGUACUCGUUAAAAACUGGUAUUUAUU
.......((((..(..((((((..((((...(((((...))))).))))...))-))))..)...))-))..(((.....)))(((((((.((.....)).)))))))... ( -19.00)
>DroEre_CAF1 10487 111 - 1
UGUUUUCUCUAUUCUUUGUUUACCUGUUUCUUUUCCAUGGGAAAUGGCAUUUGGCAAUUUCGCUUUAUGCAAUCCAAUUGGAGAGGUUCUCGGUAAUAACCGGUAUUUCUU
....................((((.....((((((((..(((....((((..(((......)))..))))..)))...)))))))).....(((....)))))))...... ( -28.50)
>DroYak_CAF1 10440 111 - 1
UAUUUUCUCUAUUCUUUGUUUACCUGUUCCUUUUCCAUCGGAAAUGGCAUUUGGCACAUUCGCUUUAUGCAAUUCAAUUGGUGAGGUACGCGGUAAUAACCGGUAUUUCUU
....................((((.((.((((..(((...(((...((((..(((......)))..))))..)))...))).)))).))..(((....)))))))...... ( -26.90)
>consensus
UGUUUUCUCUAUUCUUUGUUUACCUGUUUCUUUUCCAUCGGAAAUGGCAUUUGGCAAUUUCGCUUUAUGCAAUCCAAUUGGGAAGGUACUCGGUAAUAACCGGUAUUUCUU
....................((((.(((.((((((((..(((....((((..(((......)))..))))..)))...))))))))...........))).))))...... (-16.80 = -17.43 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:46 2006