| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,683,672 – 7,683,775 |
| Length | 103 |
| Max. P | 0.651654 |
| Location | 7,683,672 – 7,683,775 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.70 |
| Mean single sequence MFE | -41.62 |
| Consensus MFE | -27.38 |
| Energy contribution | -27.47 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7683672 103 - 20766785 CGGGCGUCGUCGUUG---UCGUCCUCCCAGUCGGAUUGCUCCGACUUGGAGUCGCAGCCCGACAUCCACUCGCUGUGCUCGGACGAUGACUGCCAGGAAGUGCUGC ..(((((((((((((---.((..((((.(((((((....))))))).)))).))))))((((....(((.....))).))))..)))))).)))............ ( -43.20) >DroVir_CAF1 4310 103 - 1 CGGGCAUCGUCACCUUCGUCGUCUUCGUCGUCAGAAUGCUCUGACACGGAGUCGCA---UGACAUUCAUUCGUUAUGCUCGGAGGAUGACUGCCAGGAGGUGUUGC ..((((..((((((((((..(.((((((.((((((....)))))))))))).)(((---((((........))))))).)))))).))))))))............ ( -44.10) >DroGri_CAF1 4979 100 - 1 CGGGCUUCGUCAUCC---UCAUCUUCGUCGUCGGAAUGCUCUGACUCGGAGUCGCA---UGACAUUCAUUCGUUGUGCUCAGAGGAUGACUGCCAGGAGGUGUUGC ..(((...(((((((---((..(((((..((((((....)))))).)))))..(((---..((........))..)))...))))))))).)))............ ( -41.00) >DroEre_CAF1 5151 103 - 1 CGGGCGUCGUCGUUG---UCGUCCUCCCAGUCGGAUUGCUCCGAUUUGGAGUCGCAGCCCGACAUCCACUCGCUGUGCUCGGACGAUGACUGCCAGGAAGUGCUAC ..(((((((((((((---.((..((((.(((((((....))))))).)))).))))))((((....(((.....))).))))..)))))).)))............ ( -40.90) >DroYak_CAF1 5126 103 - 1 CGGGCGUCGUCGUUG---UCGUCCUCCCAGUCGGAUUGCUCCGACUUGGAGUCGCAGCCCGACAUCCACUCGCUGUGCUCGGAAGAUGACUGCCAGGAAGUGCUGC ..(((((((((((((---.((..((((.(((((((....))))))).)))).))))))((((....(((.....))).))))..)))))).)))............ ( -43.10) >DroAna_CAF1 5465 103 - 1 AGGGCGUCGUCGCUG---UCGUCCUCCUCGUCGGAAAUCUCCGACUUGGAGUCACAGGGAGACAUCCAUUCGCUGUACUCGAACGAUGAUUGCCAAGAGGUGCUGC ((.((.((...((.(---(((((((((..((((((....))))))..))))..((((.(((.......))).))))........)))))).))...)).)).)).. ( -37.40) >consensus CGGGCGUCGUCGUUG___UCGUCCUCCCAGUCGGAAUGCUCCGACUUGGAGUCGCAGCCCGACAUCCACUCGCUGUGCUCGGACGAUGACUGCCAGGAAGUGCUGC ..(((((((((..................((((((....))))))((.(((.(((((..(((.......))))))))))).)).)))))).)))............ (-27.38 = -27.47 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:31 2006