Locus 2037

Sequence ID	2R_DroMel_CAF1
Location	7,680,975 – 7,681,065
Length	90
Max. P	0.728611

overview

Window 9

Location	7,680,975 – 7,681,065
Length	90
Sequences	4
Columns	94
Reading direction	forward
Mean pairwise identity	78.28
Mean single sequence MFE	-26.52
Consensus MFE	-17.21
Energy contribution	-18.65
Covariance contribution	1.44
Combinations/Pair	1.12
Mean z-score	-1.79
Structure conservation index	0.65
SVM decision value	0.42
SVM RNA-class probability	0.728611
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7680975 90 + 20766785
--CAUUGGCUAGAGUUUAAAUAGAAUAUAUCCUGGCCACAGGAUACAGGAUU--AUCCUAGUGGCGACGCGAUCCCGUGUGCCGCUUGUGAUGC
--...(((((((..(.((.......)).)..))))))).((((((......)--)))))((((((.(((((....)))))))))))........ ( -29.70)
>DroSim_CAF1 2397 87 + 1
--CAUAGGCUAGAGUUUAAAUAGAAUAUAUCCUGGCCACAUGUCCC---AUC--AUCCUAGUGGCGACGCGAUCCCGUGUGCCGCUUGUGAUGC
--....((((((..(.((.......)).)..))))))........(---(((--((...((((((.(((((....))))))))))).)))))). ( -30.40)
>DroEre_CAF1 2467 92 + 1
CACAUAAGCUAGAGUUUAAAUAGAAUAUAUAUUGGCCACAUCCUU--GGUCCACAUCCUAGUGGCGACGCGAUCCUGUGUGCCGCUUGUGAUGC
....(((((....)))))..............((((((......)--)).)))(((((.((((((.(((((....))))))))))).).)))). ( -25.70)
>DroYak_CAF1 2419 76 + 1
--------------UUUAAAUAGAAUAAAUCUCAGCCACAUCCUU--GGACU--AUCCUAGUGGCGGCGCGAUCCUGUGUGCCGCUUGUGAUGC
--------------..............(((.(((((((......--((...--..))..)))))((((((......))))))...)).))).. ( -20.30)
>consensus
__CAUAGGCUAGAGUUUAAAUAGAAUAUAUCCUGGCCACAUCCUU__GGACC__AUCCUAGUGGCGACGCGAUCCCGUGUGCCGCUUGUGAUGC
......((((((.((.((.......)).)).)))))).................((((.((((((.(((((....))))))))))).).))).. (-17.21 = -18.65 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:30 2006