Locus 2036

Sequence ID 2R_DroMel_CAF1
Location 7,679,832 – 7,679,941
Length 109
Max. P 0.500000
window3368

overview

Window 8

Location 7,679,832 – 7,679,941
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 69.53
Mean single sequence MFE -35.82
Consensus MFE -9.46
Energy contribution -10.42
Covariance contribution 0.96
Combinations/Pair 1.33
Mean z-score -1.73
Structure conservation index 0.26
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7679832 109 - 20766785
GCCAAUGGAGUCCGCGGUGGAGAGAUCAGCCUCCUC-AGCGGGUUUCUUGUCCUG--CCAAGCGAAUGGAUUU-UGUUG-GUUGGUUUUGAAAUGG----AAAAACUAAAG--AUAUGAC
(((((..((((((.(((.((((........)))).)-.(((((........))))--)....))...))))))-..)))-))(((((((.......----.)))))))...--....... ( -34.70)
>DroPse_CAF1 10371 118 - 1
GCUGACAGAGUCGGCAGUAGAGAGGUCACCCUCGGACAUGAAAAUUUUCCUCUUGGAAGAAACAAAUCGAUCUACGUUGAAUUGGUCCGU--AUGGUGUGAUAUACUAUAAUUUUUUCAC
((((((...)))))).((((....(((((((.(((((.......((((((....))))))..(((.(((((....))))).)))))))).--..)).)))))...))))........... ( -37.10)
>DroSec_CAF1 9562 109 - 1
GCCAAUGGAGUCUGCUGUGGAGAGAUCAGCCUCCUC-AGCGGGUUUCUUGUCCUG--CCAAGCGAUUGGAUUU-CGUGG-GUUGGUUGCGAAAUGG----AGAAACUAAAG--AUACGAC
......(((..((((((.((((........)))).)-)))))..)))((.(((..--((((....))))((((-((..(-.....)..))))))))----).)).......--....... ( -35.20)
>DroSim_CAF1 9265 109 - 1
GCCAAUGGAGUCUGCGGUGGAGAGAUCAGCCUCCUC-AGCGGGCUUCUUGUCCUG--CCAAGCGAUUCGAUUU-CGUGG-GUUGGUUGGGAAAUGG----AGAAACUUAAG--AUACGAC
......(((((((((.(.((((........)))).)-.)))))))))((.((((.--((((.(((((((....-..)))-)))).)))).)...))----).)).......--....... ( -35.00)
>DroPer_CAF1 12830 118 - 1
GCUGACAGAGUCGGCAGUAGAGAGGUCACCCUCGGACAUGAAAAUUUUCCUCUUGGAAGAAACAAAUCGAUCUACGUUGAAUUGGUCCGU--AUGGUGUGAUAUACUAUAAUUUUUUCAC
((((((...)))))).((((....(((((((.(((((.......((((((....))))))..(((.(((((....))))).)))))))).--..)).)))))...))))........... ( -37.10)
>consensus
GCCAAUGGAGUCGGCAGUGGAGAGAUCAGCCUCCUC_AGCGGGAUUCUUGUCCUG__CCAAGCGAAUCGAUUU_CGUUG_GUUGGUUCGGAAAUGG____AGAAACUAAAG__AUAUGAC
(((((((((((((((...((((........))))....))))))))).....((......))..................)))))).................................. ( -9.46 = -10.42 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:29 2006