Locus 2035

Sequence ID 2R_DroMel_CAF1
Location 7,678,752 – 7,678,848
Length 96
Max. P 0.608905
window3367

overview

Window 7

Location 7,678,752 – 7,678,848
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 95.83
Mean single sequence MFE -18.87
Consensus MFE -17.75
Energy contribution -17.87
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.64
Structure conservation index 0.94
SVM decision value 0.15
SVM RNA-class probability 0.608905
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7678752 96 - 20766785
CCAAAGAAAGGCAGAAAAAGUGCCAAAUAGGCAGUACAGUUGCAAAUUAACUGCCAGGUAAGAUAUUCAAACCAAGAUUAGCUGGGGGAAAAGCGA
((..((...(((((......((((.....))))(((....))).......))))).(((..(.....)..)))........))..))......... ( -20.30)
>DroSec_CAF1 8468 96 - 1
CCAAAGAAAGGCAGAAAAAGUUCCAAAUAGGUAGUACAGUUACAAGUUAACUGCCAGGUAAGAAAUUCAAACCAAGAUUAGCUGGGGGAAAAGCGA
....................((((...(((.((((.((((((.....))))))...(((..(.....)..)))...)))).)))..))))...... ( -15.70)
>DroSim_CAF1 8154 96 - 1
CCAAAGAAAGGCAGAAAAAGUGCCAAAUAGGCAGUACAGUUACAAGUUAACUGCCAGGUAAGAAAUUGAAACCAAGAUUAGCUGGGGGAAAAGCGA
..........((......(.((((.....)))).).((((((.....))))))((((.(((....(((....)))..))).)))).......)).. ( -20.60)
>consensus
CCAAAGAAAGGCAGAAAAAGUGCCAAAUAGGCAGUACAGUUACAAGUUAACUGCCAGGUAAGAAAUUCAAACCAAGAUUAGCUGGGGGAAAAGCGA
((..((...(((((......((((.....))))(((....))).......))))).(((...........)))........))..))......... (-17.75 = -17.87 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:27 2006