Locus 2033

Sequence ID 2R_DroMel_CAF1
Location 7,678,247 – 7,678,367
Length 120
Max. P 0.837955
window3363

overview

Window 3

Location 7,678,247 – 7,678,367
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.08
Mean single sequence MFE -39.46
Consensus MFE -31.54
Energy contribution -31.70
Covariance contribution 0.16
Combinations/Pair 1.10
Mean z-score -1.73
Structure conservation index 0.80
SVM decision value 0.74
SVM RNA-class probability 0.837955
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7678247 120 - 20766785
CACGCCCAAGCCGGACAUACUCACCGAGGAGAAGCUGCAGGAGAAGGCGCUUAAAUGGCAGCAUCUGCAGUCCAAGCGAUUCGCUGAGAAGCGCAAGUUUGGCUUCGUGGAUACCCAGAA
((((...(((((((((...(((......)))..((((((((.....(((((.....))).)).))))))))....(((.(((.....))).)))..)))))))))))))........... ( -39.70)
>DroPse_CAF1 6856 120 - 1
CACGCCAAAGCCGGACAUACUUACGGAGGAUAAACUGCAGGAGAAGGCGCUAAAGUGGCAAAAUCUGCAGUCCAAGCGUUUCGCUGAGAAGCGAAAGUUCGGCUUCGUCGACACACAGAA
..((.(.(((((((((...........(((....(((((((....(.(((....))).)....)))))))))).....(((((((....)))))))))))))))).).)).......... ( -41.20)
>DroSec_CAF1 7963 120 - 1
CACGCCCAAACCGGACAUACUCACCGAGGAGAAGCUGCAGGAGAAGGCGCUCAAAUGGCAGCAUCUGCAGUCCAAGCGAUUCGCUGAGAAGCGCAAGUUUGGCUUUGUGGAUACCCAAAA
((((.((((((.((((...(((...))).(((.(((((..(((......))).....))))).)))...))))..(((.(((.....))).)))..))))))...))))........... ( -37.60)
>DroSim_CAF1 7649 120 - 1
CACGCCCAAACCGGACAUACUCACCGAGGAGAAGCUGCAGGAGAAGGCGCUCAAAUGGCAGCAUCUGCAGUCCAAGCGAUUCGCUGAGAAGCGCAAGUUUGGCUUCGUGGAUACCCAAAA
((((.((((((.((((...(((...))).(((.(((((..(((......))).....))))).)))...))))..(((.(((.....))).)))..))))))...))))........... ( -39.30)
>DroPer_CAF1 6857 120 - 1
CACGCCAAAGCCGGACAUACUUACGGAGGAUAAACUGCAGGAGAAGGCGCUAAAGUGGCAGAAUCUGCAGUCCAAGCGUUUCGCUGAGAAGCGAAAGUUCGGCUUCGUUGACACACAGAA
.(((...(((((((((...........(((....(((((((....(.(((....))).)....)))))))))).....(((((((....)))))))))))))))))))............ ( -39.50)
>consensus
CACGCCCAAGCCGGACAUACUCACCGAGGAGAAGCUGCAGGAGAAGGCGCUAAAAUGGCAGCAUCUGCAGUCCAAGCGAUUCGCUGAGAAGCGCAAGUUUGGCUUCGUGGAUACCCAGAA
((((...(((((((((...........((....((((((((.....((.(......)))....))))))))))........((((....))))...)))))))))))))........... (-31.54 = -31.70 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:23 2006