Locus 2030

Sequence ID 2R_DroMel_CAF1
Location 7,665,692 – 7,665,800
Length 108
Max. P 0.596938
window3358

overview

Window 8

Location 7,665,692 – 7,665,800
Length 108
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 80.26
Mean single sequence MFE -42.40
Consensus MFE -23.36
Energy contribution -24.28
Covariance contribution 0.92
Combinations/Pair 1.22
Mean z-score -1.96
Structure conservation index 0.55
SVM decision value 0.13
SVM RNA-class probability 0.596938
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7665692 108 + 20766785
---CUCAGUGCCGGCAGCAGAUCCUGCCGAGGAGCAGGACUCCUCAUCGUCGUUCUCAUGGAACUCGAAGCCAUUGGCGCUGCUGGAACCACCACUCAAGCGCUGGCGCUU
---...(((((((((.((((...)))).((((((.....)))))).(((..((((.....)))).))).)))...((((((..(((.....)))....)))))))))))). ( -44.80)
>DroPse_CAF1 3133 105 + 1
CACUUCACCACCGCCAGCAGACCCCGACGAUG---AGGAAUCCUCGUCGUCGUUCUCGUGGAACUCAUAUCCAUUGCCAUUUGU--CGCCG-CGCUGAGGCGCAGGCAUUU
............(((.((.(((..((((((((---(((...))))))))))).....(((((.......)))))........))--))).(-(((....)))).))).... ( -38.30)
>DroSim_CAF1 3255 108 + 1
---CUCGGUGCCGGCAGCAGAUCCUGCCGAGGAACAGGACUCCUCAUCGUCGUUCUCGUGGAACUCGAAGCCGUUGGCGCUGCUGGAACCGCCACUCAAGCGCUGGCGUUU
---...(((.((((((((..........(((((.......))))).(((..((((.....)))).))).(((...))))))))))).)))(((((......).)))).... ( -41.50)
>DroEre_CAF1 3071 108 + 1
---CUCAGUGCCGGCAGCAGAUCCUGCCGAGGAACAGGACUCCUCAUCGUCGUUCUCGUGGAACUCGAAGCCAUUGGCGCUGCUGGAGCCACCGCUCAAGCGCUGGCGCUU
---...(((((((((.((((...)))).(((((.......))))).(((..((((.....)))).))).)))...((((((....((((....)))).)))))))))))). ( -45.60)
>DroYak_CAF1 3268 108 + 1
---CUCAGUGCCGGCAGCAGAGCCUGACGAGGAACAGGACUCCUCAUCGUCGUUCUCGUGGAACUCGAAGCCAUUGGCGGUGCUGGAGCCACCGCUCAAGCGCUGGCACUU
---...(((((((((.((.(((..(.(((((((....(((........))).))))))).)..))).......((((((((((....).)))))).)))))))))))))). ( -45.90)
>DroPer_CAF1 3054 105 + 1
CACUUCACCACCGCCAGCAGACCCCGACGAUG---AGGAAUCCUCGUCGUCGUUCUCGUGGAACUCAUAUCCAUUGCCAUUUGU--CGCCG-CGCUGAGGCGCAGGCAUUU
............(((.((.(((..((((((((---(((...))))))))))).....(((((.......)))))........))--))).(-(((....)))).))).... ( -38.30)
>consensus
___CUCAGUGCCGGCAGCAGAUCCUGACGAGGAACAGGACUCCUCAUCGUCGUUCUCGUGGAACUCGAAGCCAUUGGCGCUGCUGGAGCCACCGCUCAAGCGCUGGCACUU
..........((((((((.(((..((..(((........)))..))..)))((((.....))))..............)))))))).((((.(((....))).)))).... (-23.36 = -24.28 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:18 2006