| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,663,470 – 7,663,584 |
| Length | 114 |
| Max. P | 0.670622 |
| Location | 7,663,470 – 7,663,584 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.88 |
| Mean single sequence MFE | -35.65 |
| Consensus MFE | -20.24 |
| Energy contribution | -20.35 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7663470 114 - 20766785 GCGUUCCAAGUCGAAUAAGAAAACGACGAAAAAG---AAG---UUUUCGUGGGCGGAGGUGCUAUCGCAGGAUCCUGAUCAAAUAGCCCGCGAAAGGGCAGUGAAGGAGUUUGAGCGGGA .(((((.((.((...........(.(((((((..---...---))))))).)(((((..(((....)))...)))..........((((......)))).))....)).)).)))))... ( -31.30) >DroVir_CAF1 14558 117 - 1 GCGUUCCAAGUCCAACAAAAAGAAUGCCAAGAAGAAGAAA---UUCUCGUGGGCGGAAGUGCUGUCACAGGAUCCCGAUCAAAUAGCACGCGAACGUGCCGUCAAAGAGUUUGAGCGUGA ((((((.((.((...............((.((.(((....---))))).))(((((..(((((((.....(((....)))..)))))))((....)).)))))...)).)).)))))).. ( -31.10) >DroGri_CAF1 885 117 - 1 GCGUUCCAAGUCCAACCGGAAGAAUGUCAAAAAGAAGAUA---UUCUCAUGGGCGGAGGUGCUUUCCCAAGAUCCCGAUCAAAUAGCACGCGAACGUGCUGUGAAGGAGUUUGAGCGUGA ((((((.((.(((..(((..((((((((........))))---))))..))).(((.(((.(((....))))))))).....((((((((....))))))))...))).)).)))))).. ( -42.10) >DroWil_CAF1 19264 117 - 1 GCGCUCAAAAUCUGAGAAGAAAAACGUUAAAAAG---AAAAGUUUCUCCUGGGCCGAGGUGCUAUUACAAGAUCCAGAUCAAAUAGCUAGGGAACGGGCUGUAAAAGAGUUUGAGCGAGA .((((((((.(((((((((.....(........)---.....))))))((((..(...(((....)))..)..)))).....((((((.(....).))))))...))).))))))))... ( -33.40) >DroMoj_CAF1 930 117 - 1 GCGUUCCAAGUCCAACAAGAAGAAUGCUAAAAAGUUGAAA---UUCUCCUGGGCAGAGGUGCUAUCGCAAGAUCCCGAUCAAAUUGCACGCGAGCGUGCGGUCAAGGAGUUUGAGCGUGA ((((((....((......)).))))))......(((.(((---..(((((.(((.((..((..(((....)))..)).))....((((((....))))))))).)))))))).))).... ( -33.70) >DroAna_CAF1 817 114 - 1 CCGCUCCAAGUCGAGCAAGAAGACGACGAAAAAG---AAG---UUCUCGUGGGCGGAGGUCCUCUCCCAGGAUCCCGACCAAAUAGCCCGGGAACGAGCAGUCAAGGAGUUCGAGCGGGA ((((((...((((..........))))......(---((.---((((..(((.(((.((((((.....))))))))).)))....((.((....)).)).....)))).))))))))).. ( -42.30) >consensus GCGUUCCAAGUCCAACAAGAAGAAUGCCAAAAAG___AAA___UUCUCGUGGGCGGAGGUGCUAUCACAAGAUCCCGAUCAAAUAGCACGCGAACGUGCAGUCAAGGAGUUUGAGCGUGA ((((((.((.((.....................................(((.(((.(((.((......)))))))).)))....(((((....))))).......)).)).)))))).. (-20.24 = -20.35 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:17 2006