Locus 2028

Sequence ID 2R_DroMel_CAF1
Location 7,662,823 – 7,662,914
Length 91
Max. P 0.532723
window3356

overview

Window 6

Location 7,662,823 – 7,662,914
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 82.34
Mean single sequence MFE -31.87
Consensus MFE -23.70
Energy contribution -23.40
Covariance contribution -0.30
Combinations/Pair 1.19
Mean z-score -1.34
Structure conservation index 0.74
SVM decision value -0.00
SVM RNA-class probability 0.532723
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7662823 91 - 20766785
CUGGCCGCCGGAGCCGUUAGCAAGAACCGCACUACGCCGCUAUCGGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGCAAGGAGAAUU
((((((((....((((.((((.................)))).)))).))))))))........(((((...))))).(....)....... ( -33.43)
>DroPse_CAF1 279 91 - 1
UUUGCCGGCGGUGCUGUUAGCAAAUCUCGGUCUACGCCGUUGUCAGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGCAAAGAAAAUG
((((((((((..((((...........))))...))))).........(((((((((.((....)).)))).)))))..)))))....... ( -31.00)
>DroSec_CAF1 220 91 - 1
CUGGCCGCCGGAGCCGUUGGCAAGAACCGCACUACGCCGCUAUCGGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGCAAGGAGAAUU
(((((((((((((((((..((.......))...)))..))).)))))...))))))........(((((...))))).(....)....... ( -33.50)
>DroEre_CAF1 219 91 - 1
UUCGCCGCCGGAGCCAUAAGCAAGAACCGCUCUACGCCGCUAUCGGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGUAAGGAGAAUU
(((.((((((((((....(((.......))).......))).))))).(((((((((.((....)).)))).)))))......)).))).. ( -31.50)
>DroAna_CAF1 291 85 - 1
C------UCGGCGCUGUGAGUAAGAUCCGCUCCACUCCUCUGUCAGCGGUGGCCAGUAACAAACGUGGCUGUGCCACACGCAAGGAGAACA
(------((((((..(.((((.((.....))..)))))..)))).((((((((((((.((....)).)))).))))).)))...))).... ( -30.80)
>DroPer_CAF1 199 91 - 1
UUUGCCGGCGGUGCUGUUAGCAAAUCUCGGUCUACGCCGUUGUCAGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGCAAAGAAAAUG
((((((((((..((((...........))))...))))).........(((((((((.((....)).)))).)))))..)))))....... ( -31.00)
>consensus
CUGGCCGCCGGAGCCGUUAGCAAGAACCGCUCUACGCCGCUAUCAGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGCAAGGAGAAUU
........((..((((.((((.................)))).)))).(((((((((.((....)).)))).))))).))........... (-23.70 = -23.40 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:16 2006