Locus 2023

Sequence ID 2R_DroMel_CAF1
Location 7,630,513 – 7,630,614
Length 101
Max. P 0.610599
window3347

overview

Window 7

Location 7,630,513 – 7,630,614
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 76.94
Mean single sequence MFE -17.39
Consensus MFE -12.83
Energy contribution -12.71
Covariance contribution -0.12
Combinations/Pair 1.15
Mean z-score -1.26
Structure conservation index 0.74
SVM decision value 0.16
SVM RNA-class probability 0.610599
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7630513 101 + 20766785
AGGGUAAGGGGCGGGUACGGGUGGUACGGAAAGCGGAGCGAGGGCCAUAACAAUGAGG-AAAAUUGUGCAAACAUGCGCAUAAAAUGAAAACUCAUUGAUUG
.........(((..((((.....)))).....((...))....)))....(((((((.-.....((((((....))))))...........))))))).... ( -22.53)
>DroSec_CAF1 75482 83 + 1
AGGG-----G--------GGGGGUUACGGAAAG-----CGAGGGCCAUAACAAUGAGG-AAAAUUGUGCAAACAUGCGCACAAAAUAAAAACACAUUGAUUG
....-----.--------..((.(..((.....-----))..).))....(((((.(.-....((((((........))))))........).))))).... ( -14.02)
>DroEre_CAF1 78464 83 + 1
UGGA-----G--------GGAG---GCGGAAAGC--AGCGAGGGACACAACAAUGAGA-AAUAUUGUGCAAACAUGCGCAUAAAAUGAAAACUCAUUGAUUG
....-----.--------.(..---((.....))--..)........((((((((((.-.....((((((....)))))).....(....)))))))).))) ( -16.10)
>DroYak_CAF1 78408 83 + 1
UGGG-----G--------GGAG---ACGGAAAGC--AGCGAGGGCCAUAACAAUGAGG-GAAAUUGUGCAAACAUGCGCAUAAAAUGAAAACUCAUUGAUUG
....-----.--------(...---.).......--.((....)).....(((((((.-.....((((((....))))))...........))))))).... ( -15.93)
>DroAna_CAF1 74293 82 + 1
--GG-----G--------AAAG---CGGGAAACC--AAUGCCACCAAUAACGAUGAGGGAAAAUUGUGCAAACAUGCGCAUAAAAUGAAAAUUCAUUGAUUG
--((-----.--------...(---(((....))--...))..)).....(((((((.......((((((....))))))...........))))))).... ( -18.37)
>consensus
AGGG_____G________GGAG___ACGGAAAGC__AGCGAGGGCCAUAACAAUGAGG_AAAAUUGUGCAAACAUGCGCAUAAAAUGAAAACUCAUUGAUUG
..................................................(((((((.......((((((....))))))...........))))))).... (-12.83 = -12.71 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:07 2006