Locus 2021

Sequence ID 2R_DroMel_CAF1
Location 7,611,163 – 7,611,265
Length 102
Max. P 0.528895
window3345

overview

Window 5

Location 7,611,163 – 7,611,265
Length 102
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 83.94
Mean single sequence MFE -33.63
Consensus MFE -25.23
Energy contribution -25.68
Covariance contribution 0.45
Combinations/Pair 1.12
Mean z-score -1.66
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.528895
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7611163 102 + 20766785
GUGGCUCAAAUUGCAACUAACCGGUGGGUGGAAGUGAGCUCGAAGUGGGAGUGGAAGC------GAGUCUGGUUUGGUUCUAGUUC------UGGUUCUUCUUUCAUUUCUGGU
..((((((..(..(.(((....)))..)..)...)))))).((((((..((.((((.(------(((.((((.......)))))))------.).)))).))..)))))).... ( -31.90)
>DroSec_CAF1 56442 102 + 1
GUGGCUCAAAUUGCAACUAACCGGUGGGUGGCAGUGAGCUCGAAAUGGAAGUGGCAGU------GGGUCUGGUUUGGUUCUAGUUC------UGGUUCUUCUUCCUUUUCUGGU
..((((((...(((.....(((....))).))).)))))).((((.(((((.((.(.(------((..((((.......))))..)------)).).)).))))).)))).... ( -30.10)
>DroYak_CAF1 58675 109 + 1
GUGGCUCAAAUUGCAACUAACCGGUGGGUGCAAGUGAGCUGGAAGUGGAAGUGGAAGUGGGAGU-----UGGUUUGGUUCUAGUUCUGGUUCUGGUUCUUCUUCCAUUUCUGGU
..((((((..(((((.(((.....))).))))).))))))(((((((((((.((((.(.((((.-----.((.(((....)))..))..)))).))))).)))))))))))... ( -38.90)
>consensus
GUGGCUCAAAUUGCAACUAACCGGUGGGUGGAAGUGAGCUCGAAGUGGAAGUGGAAGU______G_GUCUGGUUUGGUUCUAGUUC______UGGUUCUUCUUCCAUUUCUGGU
..((((((..((((.(((....)))..))))...)))))).((((((((((.((((.(..........((((.......))))..........).)))).)))))))))).... (-25.23 = -25.68 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:05 2006