Locus 2017

Sequence ID 2R_DroMel_CAF1
Location 7,591,820 – 7,591,940
Length 120
Max. P 0.957303
window3338

overview

Window 8

Location 7,591,820 – 7,591,940
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.65
Mean single sequence MFE -34.95
Consensus MFE -33.75
Energy contribution -34.00
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.10
Structure conservation index 0.97
SVM decision value 1.48
SVM RNA-class probability 0.957303
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7591820 120 + 20766785
CACACAUGACCUGAGGGGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCAAGGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCUCCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUG
....(((((.....((.((..((((((((((((.......))))))))))))....)).)).........(((((((((..((((((.....)))))).....)))))))))...))))) ( -35.90)
>DroSim_CAF1 38321 118 + 1
--CACAUGACCUGAGGGGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCAAGGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCUCCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUG
--..(((((.....((.((..((((((((((((.......))))))))))))....)).)).........(((((((((..((((((.....)))))).....)))))))))...))))) ( -35.90)
>DroEre_CAF1 36860 117 + 1
--CACAUGACCUGAGGAGCAUUGCGGUUGAGCUGCUUGGAAGUUUAAUUGAGCA-GGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCCUCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUG
--..(((((.....((.((.((((.((((((((.......))))))))...)))-))).)).........(((((((((..((((((.....)))))).....)))))))))...))))) ( -33.40)
>DroYak_CAF1 38144 117 + 1
--CACAUGACCUGAGGAGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCA-GGCGCCGGCAAACAGGAUGUUGAAAUAGAGCCCUCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUG
--..(((((.(((.((.((..((((((((((((.......))))))))))))..-.)).))......)))(((((((((..((((((.....)))))).....)))))))))...))))) ( -34.60)
>consensus
__CACAUGACCUGAGGAGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCA_GGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCCCCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUG
....(((((.....((.((..((((((((((((.......))))))))))))....)).)).........(((((((((..((((((.....)))))).....)))))))))...))))) (-33.75 = -34.00 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:58 2006