Locus 201

Sequence ID 2R_DroMel_CAF1
Location 1,467,020 – 1,467,116
Length 96
Max. P 0.727453
window464

overview

Window 4

Location 1,467,020 – 1,467,116
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 77.92
Mean single sequence MFE -30.57
Consensus MFE -19.71
Energy contribution -20.27
Covariance contribution 0.56
Combinations/Pair 1.27
Mean z-score -1.47
Structure conservation index 0.64
SVM decision value 0.42
SVM RNA-class probability 0.727453
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1467020 96 + 20766785
GCGAGGACGCCAUCCCUCAGAGGUGGCUCCUCUCGUCGCUUUGGGUUUUAAAUCAAAGGUGAUGCUCCCGAAGCAGAUGUCCAUUUAAUAUAAAGC
(((((((.((((((.......))))))))))).((((((((((((......((((....))))...)))))))).))))...............)) ( -35.20)
>DroSec_CAF1 86813 96 + 1
GCGAGGACGCGAUCCCUCAGAGGUGGCGCCUCUCGUCGCUUUGGGCUUUAAAUCAAAGGUGAUGCUCCCGAAGCAGACGUCGAUUUAAUAUUAAAC
..((((.(((.(((.......))).))))))).((((((((((((......((((....))))...)))))))).))))................. ( -32.50)
>DroSim_CAF1 86729 96 + 1
GCGAGGACGCGAUCCCUCAGAGGUGGCGCCUCUCGUCGCUUUGGGCUUUAAAUCAAAGGUGAUGCUCCCGAAGCAGACGUCGAUUUAAUAUUAAAC
..((((.(((.(((.......))).))))))).((((((((((((......((((....))))...)))))))).))))................. ( -32.50)
>DroEre_CAF1 97682 96 + 1
GCGAGGACGUGAUCCGUCAGAGGUGGCUCCUCUCGUCGCUUCGGGCUUUAAGUCAAAAGUGAUGCUCCCGAAACAGGCGGCAAUUUUAGGUUAAAC
(.(((((.((.((((....).))).))))))).)(((((((((((......((((....))))...)))))....))))))............... ( -29.90)
>DroYak_CAF1 92255 96 + 1
GCGAGGACGUGAUCCGUCAGAGGUGGCUCCUCUCGUUGCUUCGGGUUUUAAAUCAAAAGUGAUGCUCCCGAAACAGGCGGCGAUUUAAAACUAUUC
..(((((.((.((((....).))).)))))))(((((((((((((......((((....))))...)))))....))))))))............. ( -31.10)
>DroPer_CAF1 1759 75 + 1
UCGCGGCCGCGAUCCAUCCGAGGUUGCUCCGCUCGUCGCCGACGGCUUUAAAUCAAAAGUCUUGCGCACA-CGC--AC------------------
..((((..(((((((....).)))))).))))..((.(((((.((((((......))))))))).)))).-...--..------------------ ( -22.20)
>consensus
GCGAGGACGCGAUCCCUCAGAGGUGGCUCCUCUCGUCGCUUUGGGCUUUAAAUCAAAAGUGAUGCUCCCGAAGCAGACGUCGAUUUAAUAUUAAAC
..((((..((.((((....).))).)).)))).((((((((((((......((((....))))...)))))))).))))................. (-19.71 = -20.27 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:20 2006