Locus 2006

Sequence ID 2R_DroMel_CAF1
Location 7,550,004 – 7,550,094
Length 90
Max. P 0.783162
window3315

overview

Window 5

Location 7,550,004 – 7,550,094
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 92.59
Mean single sequence MFE -34.10
Consensus MFE -27.83
Energy contribution -27.95
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -1.91
Structure conservation index 0.82
SVM decision value 0.56
SVM RNA-class probability 0.783162
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7550004 90 - 20766785
UCCUGCUGGCGAUGCGUGACGUCACAGCCGACUUCGGCUGGUUCCACCUGCAUUUCGUGGUUUUGCCGGCGUAAGCUUUGUUUGGAAUUA
(((....(((((.((...(((((..(((((....)))))(((.((((.........))))....))))))))..)).))))).))).... ( -31.80)
>DroSec_CAF1 8280 90 - 1
UCCUGCUGGCGAUGCGUGACGUCACAGCCGACGUCGGCUGGUUCCACCUGCAUUUCGCGGUUUGGCCGGCGUAAGCUUUGUUUGGAAUUG
(((.((.(((..(((.(((((((......)))))))(((((((..(((.((.....)))))..)))))))))).)))..))..))).... ( -34.50)
>DroSim_CAF1 8541 90 - 1
UCCUGCUGGCGAUGCGUGACGUCACAGCCGACGUCGGCUGGUUCCACCUGCAUUUCGCAGUUUUGCCGGCGUAAGCUUUGUUUGGAAUUG
(((.((.(((..(((.(((((((......)))))))((((((.....((((.....))))....))))))))).)))..))..))).... ( -33.70)
>DroYak_CAF1 8294 90 - 1
UCAUGCUGGCGAAGCGUGACGUCACAGCCGACGUCGGUUGGUUCAACCUGCAUUUUGAUGUUUUGCCGGCGCAAGCUUUGUUUGGAACUG
....(((((((((((((((((((......))))))(((((...))))).........))))))))))))).(((((...)))))...... ( -36.40)
>consensus
UCCUGCUGGCGAUGCGUGACGUCACAGCCGACGUCGGCUGGUUCCACCUGCAUUUCGCGGUUUUGCCGGCGUAAGCUUUGUUUGGAAUUG
....((((((((.((.(((((((......)))))))((.((.....)).))........)).)))))))).(((((...)))))...... (-27.83 = -27.95 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:37 2006