| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,540,419 – 7,540,539 |
| Length | 120 |
| Max. P | 0.705536 |
| Location | 7,540,419 – 7,540,539 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.61 |
| Mean single sequence MFE | -49.28 |
| Consensus MFE | -31.06 |
| Energy contribution | -31.06 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7540419 120 - 20766785 GUAUCUUCAGAAGAGCAGCGUCAUCCUGCGCUGGCGAAAGGAUAGCAAAACGUUGCGUCAAGUAGAGCUGGGCAGGAUGGACAGCACAACGAGCGAACCACAGCUGGAAACCAUGCUGCG ..............(((((((((((((((.(..((.....(((.((((....))))))).......))..)))))))).))).......(.(((........))).).......))))). ( -42.10) >DroVir_CAF1 1066 120 - 1 GCUCAGGCAGAGCAACAGCGUCACGUUGCGCUGGCGCAAAGAUGGCAAAACGUUGCGCCUGGCGGAGCUGGGCCAGGCGAGCAGCACCACCAGCGAGCCGCAGCUGGAGACAUUGCUGAG .(((((((...(((((........)))))(((((.((.......)).....((((((((((((........)))))))..)))))....)))))..)))((((.((....)))))))))) ( -53.50) >DroPse_CAF1 1064 120 - 1 GUAUCGCCAGAGCAGCAGCGUCAUCCUGCGCUGGCGCAAGGACAACAAGACCCUGCGUCAGGCGGAGCUGGGCCAGGCAAGCAGCACCACCAGCGAGCCCCAGCUGGAGAGCAUGCUGCG .....(((.(.((..((((....(((.((.((((((((.((.(.....).)).))))))))))))))))).))).)))..((((((((.(((((........))))).).)..)))))). ( -52.10) >DroMoj_CAF1 1064 120 - 1 GUACAGGCAGGGCAACAGCGUCACGCUACGCUGGCGCAAGGAUGGCAAGCCGUUGCGUCAGGUGGAGCUGGGCCUGGGCAGCAGCACCACCAGCGAGCCGCAGCUGGAGACAUUGCUGCG .....(((..(....)((((...)))).((((((((((...((((....)))))))))).(((((.((((.((....))..)))).))))))))).)))(((((((....))..))))). ( -58.40) >DroAna_CAF1 1082 120 - 1 GUAUCUUCAGGACAAAAGCGUGAUACUGCGCUGGCGAAAGGAUAACAAAACCCUUCGCCAAUCGGAGCUGGGCCGGAUGAGUGGCACCACCAGUGAACCGCAGCUGGAGAGCAUGCUGCG ...(((((((......(((((......)))))((((((.((.........)).))))))...(((.(((((((((......))))....)))))...)))...)))))))((.....)). ( -40.60) >DroPer_CAF1 1063 120 - 1 GUAUCGCCAGAGCAGCAGCGUCAUCCUGCGCUGGCGCAAGGACAACAAGACUCUGCGUCAGGCGGAGCUGGGCCAGACAAGCAGCACCACCAGCGAGCCCCAGCUGGAGAGCAUGCUGCG ...........((((((((.((...((((.(((((.(..(.....).((.((((((.....))))))))).)))))....)))).....(((((........))))).)))).)))))). ( -49.00) >consensus GUAUCGCCAGAGCAACAGCGUCAUCCUGCGCUGGCGCAAGGAUAACAAAACGCUGCGUCAGGCGGAGCUGGGCCAGACGAGCAGCACCACCAGCGAGCCGCAGCUGGAGACCAUGCUGCG ...............((((......((((.((((((((...............)))))))))))).))))..........((((((...(((((........)))))......)))))). (-31.06 = -31.06 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:27 2006