Locus 2002

Sequence ID 2R_DroMel_CAF1
Location 7,537,269 – 7,537,359
Length 90
Max. P 0.566386
window3304

overview

Window 4

Location 7,537,269 – 7,537,359
Length 90
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 93.38
Mean single sequence MFE -24.53
Consensus MFE -21.07
Energy contribution -20.97
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -1.91
Structure conservation index 0.86
SVM decision value 0.07
SVM RNA-class probability 0.566386
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7537269 90 + 20766785
AAUGUAGGGCUUAUGUUUUAUUAUAGGCCUUGUUUUGAAUUUGGUUCCUUUUCGCCU-UCGCCUCCCUUGAUUUUGGGGUGCAAAGCGAUC
....(((((((((((......)))))))))))...................((((.(-(.((.((((........)))).)).)))))).. ( -25.90)
>DroSec_CAF1 18781 89 + 1
AAUGUAGGGCUUAUGUUUUAUUAUAGGCCUUGUUUCGAAUUUGGUUCCCUUUCGCCU-UCGCCUCGCUGGAUUUUGGGGUGCAA-ACGAUC
....(((((((((((......)))))))))))..(((..((((..((((.....((.-.((...))..)).....))))..)))-)))).. ( -23.60)
>DroSim_CAF1 19202 91 + 1
AAUGUAGGGCUUAUGUUUUAUUAUAGGCCUUGUUUCGAAUUUGGUUCCCCUUCGCCUUUCGCCUUCCUGGAUUUUGGGGUGCAAAACGAUC
....(((((((((((......)))))))))))..(((..((((...((((....((............)).....))))..)))).))).. ( -24.10)
>consensus
AAUGUAGGGCUUAUGUUUUAUUAUAGGCCUUGUUUCGAAUUUGGUUCCCUUUCGCCU_UCGCCUCCCUGGAUUUUGGGGUGCAAAACGAUC
....(((((((((((......)))))))))))..(((.....(((........)))....((.((((........)))).))....))).. (-21.07 = -20.97 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:26 2006