Locus 1999

Sequence ID 2R_DroMel_CAF1
Location 7,529,632 – 7,529,738
Length 106
Max. P 0.766378
window3301

overview

Window 1

Location 7,529,632 – 7,529,738
Length 106
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 76.07
Mean single sequence MFE -29.20
Consensus MFE -19.64
Energy contribution -20.87
Covariance contribution 1.23
Combinations/Pair 1.32
Mean z-score -1.30
Structure conservation index 0.67
SVM decision value 0.52
SVM RNA-class probability 0.766378
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7529632 106 + 20766785
AUGGGGACUGAAACUGGGAAUAUAACUACUCACAUAUCACGCUCAGUUUGGCGGGCGGAGACGCCUCCCUGGCGCCGCUGGCCAAAUUUGUCGCGAUGCAAACAUA
((.(.(((..((((((((.((((..........))))....))))))))(((.(((((...((((.....))))))))).)))......))).).))......... ( -34.90)
>DroVir_CAF1 18306 88 + 1
-------------CGU-----UUGAGUACUUACAUAUCACGCUCAAUUUAGCUGGAGGCGAGGCCUGCCUGGCGCCGCUGUUAACGCUGGCUGCAAUGCACACAUA
-------------...-----((((((.............))))))..((((..(.((((..(((.....)))..)))).......)..))))............. ( -21.12)
>DroPse_CAF1 18053 93 + 1
----GGAC----AAUG-----AGGACUACUCACAUAUCACGCUCAAUUUGGCCGGUGGCGAGGCCUCUCUGGCGCCGCUGGCCAAACUGGUGGCAAUGCACACAUA
----(..(----(.((-----((.....)))).......(((.((.(((((((((((((...(((.....)))))))))))))))).)))))....))..)..... ( -37.80)
>DroWil_CAF1 13825 93 + 1
----UUUC----AAUG-----UUGAUUACUCACAUAUCACACUCAAUUUGGCUGUUGGUGACGCCUCCCUGGCGCCGCUGGACAAACUCAUGGCAAUGCACACAUA
----....----.(((-----(((...............(((.((((......)))))))..(((.....)))((((.(((......)))))))....)).)))). ( -18.10)
>DroAna_CAF1 29016 89 + 1
-----------------UCAAAUAACUACUCACAUAUCACACUCAAUUUGGCUGGGGGAGACGCCUCCCUGGCGCCGCUGGCCAAACUUGUGGCAAUGCAAACAUA
-----------------......................(((....((((((..(.((...((((.....)))))).)..))))))...))).............. ( -25.50)
>DroPer_CAF1 12033 93 + 1
----GGAC----AAUG-----AGGACUACUCACAUAUCACGCUCAAUUUGGCCGGUGGCGAGGCCUCUCUGGCGCCGCUGGCCAAACUGGUGGCAAUGCACACAUA
----(..(----(.((-----((.....)))).......(((.((.(((((((((((((...(((.....)))))))))))))))).)))))....))..)..... ( -37.80)
>consensus
____GGAC____AAUG_____AUGACUACUCACAUAUCACGCUCAAUUUGGCUGGUGGCGACGCCUCCCUGGCGCCGCUGGCCAAACUGGUGGCAAUGCACACAUA
................................(((....(((....(((((((((((((...(((.....))))))))))))))))...)))...)))........ (-19.64 = -20.87 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:23 2006