| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,516,169 – 7,516,259 |
| Length | 90 |
| Max. P | 0.758623 |
| Location | 7,516,169 – 7,516,259 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 81.55 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -17.75 |
| Energy contribution | -18.14 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.758623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7516169 90 + 20766785 AAUGUAAUGCGUAAUUUAUUUGC---------GCUUUUGUCCUGGCCAA-----CGGUGCGUAUGCGUAAUGUGAUGUGCAAUUUAUCUGUGCGCCCAGGUAAA ........((((((.....))))---------)).((((.(((((.(.(-----((.((((....)))).)))...(..((.......))..)).))))))))) ( -24.10) >DroVir_CAF1 19601 97 + 1 AAUUUUGCGCGUAAUUUAUUUGCCAAACAUUUACUUUUAGCUUGCAUAAAUUUACUCGGCGUAUGCGUAAUGU-----GUAAUUUAUGUCUGAG--CAGGUAAA ...((((.(((.........)))))))..(((((((...((((((((((((((((...(((....)))...))-----).)))))))))..)))--)))))))) ( -22.30) >DroSec_CAF1 11578 90 + 1 AAUGUAAUGCGCAAUUUAUUUGU---------GCGUUUGUCCUGGCCAA-----CGGUGCGUAUGCGUAAUGUGAUGUGCAAUUUAUGCGUGCGCCCAGGUAAA .....(((((((((.....))))---------)))))...(((((....-----....(((((((((((((((.....)))..))))))))))))))))).... ( -32.50) >DroSim_CAF1 11321 90 + 1 AAUGUAAUGCGCAAUUUAUUUGU---------GCGUUUGUCCUGGCCAA-----CGGUGCGUAUGCGUAAUGUGAUGUGCAAUUUAUGCGUGCGCCCAGGUAAA .....(((((((((.....))))---------)))))...(((((....-----....(((((((((((((((.....)))..))))))))))))))))).... ( -32.50) >DroEre_CAF1 12313 90 + 1 AAUGGAAUGCGUAAUUUAUUUGU---------GCGUUUGUCCUGGCCAU-----CGGUGCGUAUGCGUAAUGUGAUGUUCCAUUUAUGCCUGCGCCCAGGUAAA ...(((..(((((.........)---------))))...)))..(((..-----.((.(((((.((((((.(((......))))))))).))))))).)))... ( -26.80) >DroYak_CAF1 11810 90 + 1 AAUGUAAUUCGUAAUUUAUUUGU---------GCGUUUGUCCUGGCCAU-----CGGUGCGUAUGCGUAAUGUGAUGUACAAUUUAUGCGUGCGCCCAGGUAAA .........((((.........)---------)))((((.(((((....-----....((((((((((((..((.....))..))))))))))))))))))))) ( -23.70) >consensus AAUGUAAUGCGUAAUUUAUUUGU_________GCGUUUGUCCUGGCCAA_____CGGUGCGUAUGCGUAAUGUGAUGUGCAAUUUAUGCGUGCGCCCAGGUAAA ...................................((((.(((((((........)))((((((((((((.............)))))))))))).)))))))) (-17.75 = -18.14 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:13 2006