Locus 1991

Sequence ID 2R_DroMel_CAF1
Location 7,500,829 – 7,500,929
Length 100
Max. P 0.561278
window3288

overview

Window 8

Location 7,500,829 – 7,500,929
Length 100
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.26
Mean single sequence MFE -37.23
Consensus MFE -20.91
Energy contribution -22.90
Covariance contribution 1.99
Combinations/Pair 1.13
Mean z-score -2.30
Structure conservation index 0.56
SVM decision value 0.06
SVM RNA-class probability 0.561278
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7500829 100 + 20766785
CGGACUUCUCCAUGAGGGAAUUGGCAGACUUGCCGAUGCCAUUCACGGUGGAGGACUCCUUGGCCAACUG-UCCGUUUGCCUCGUGUCCAAUGGACAUCUU
.(((.(((((((((((((.((((((......)))))).)).))))...))))))).)))..(((.(((..-...))).)))..((((((...))))))... ( -37.80)
>DroSec_CAF1 13447 100 + 1
CGGACUUCUCCAUGAGGGAAUUGGCAGACUUGCCGAUGCCAUUCACGGCUGAGGCCUCCUUGGCCAACUG-GCCGUUUGCCUCGUGGCCAAUGGACAUCUU
.((.((((.((.((((((.((((((......)))))).)).)))).))..))))))((((((((((...(-((.....)))...))))))).)))...... ( -42.90)
>DroSim_CAF1 13184 100 + 1
CGGACUUCUCCAUGAGGGAAUUGGCAGACUUUCCGAUGCCAUUCACGGCUGAGGCCUCCUUGGCCAACUG-GCCGUUGGCCUCGUGGCCAAUGGACAUCUU
.(((..((((((.........))).)))...)))(((((((((...((((((((((....(((((....)-))))..))))))..))))))))).)))).. ( -42.90)
>DroEre_CAF1 13293 100 + 1
CGGACCUCUCCAUGAGGGAAUUGGCAGACUUGCCGAUGCCAUUUUCGGCGGAGGAUUCCUUGGCCAACUG-GCCGUUCGCCUCGUGGCCAAUGAACAUCUU
.(((..(((((........((((((......))))))(((......))))))))..)))(((((((...(-((.....)))...))))))).......... ( -39.90)
>DroYak_CAF1 12821 100 + 1
CGGACUUCUCCAUGAGGGAAUUGGCAGACUUGCCGAUGCCAUUUUCGGCGGAGGACUCCUUGGCCAACUG-GCCAUUCACCUCGUGGCCAAUGGACAUCUU
.(((.((((((........((((((......))))))(((......))))))))).))).((.(((..((-(((((.......))))))).))).)).... ( -38.90)
>DroPer_CAF1 10239 85 + 1
CGGUCUUCUCCAUAAUGGACUGCGCCGGCUUUUCG------------GGGUCGGCUUCCUU----AACUGCGCCAUUCUCUUCAUUGCCAAAGGACAUUUU
((((((..........)))))).((((((((....------------)))))))).(((((----...((.((.((.......)).)))))))))...... ( -21.00)
>consensus
CGGACUUCUCCAUGAGGGAAUUGGCAGACUUGCCGAUGCCAUUCACGGCGGAGGACUCCUUGGCCAACUG_GCCGUUCGCCUCGUGGCCAAUGGACAUCUU
.(..(....((((((((..((((((......)))))).........(((.((((...)))).)))..............)))))))).....)..)..... (-20.91 = -22.90 +   1.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:11 2006