| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,499,736 – 7,499,856 |
| Length | 120 |
| Max. P | 0.825174 |
| Location | 7,499,736 – 7,499,856 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.56 |
| Mean single sequence MFE | -45.80 |
| Consensus MFE | -32.68 |
| Energy contribution | -31.22 |
| Covariance contribution | -1.46 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.825174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7499736 120 - 20766785 AAUCGGCCAACUUCGGGGAACGCAUCAUCGCCUUUGCCGCCGUGGAGGGCAUCUUCUUCAGCGGCAGCUUCGCUUCCAUUUUCUGGCUUAAGAAGCGAGGUCUGAUGCCUGGAUUGACCU ....((.(((.(((((.....((((((..(((((((((((.(.(((((....))))).).))))))(((((....(((.....))).....)))))))))).)))))))))))))).)). ( -44.60) >DroVir_CAF1 9456 120 - 1 AGGCAGCUAACUUUGGGGAGCGCAUCAUCGCAUUUGCUGCUGUUGAGGGCAUCUUCUUUAGCGGCAGCUUUGCUUCUAUCUUUUGGCUGAAGAAGCGUGGCCUUAUGCCCGGCCUCACUU ...(((((((.....((((((((......))....((((((((((((((.....))))))))))))))...)))))).....)))))))...(((.(.((((........)))).).))) ( -48.40) >DroGri_CAF1 9444 120 - 1 AGGCUGCCAACUUUGGGGAGCGCAUUAUUGCCUUCGCUGCCGUCGAAGGCAUCUUCUUUAGCGGCAGUUUUGCCUCCAUCUUCUGGCUUAAAAAGCGUGGCCUAAUGCCCGGUCUGACUU ((((.((((....(((((.(((((....)))....((((((((..((((.....))))..))))))))...))))))).....))))........((.(((.....)))))))))..... ( -43.50) >DroWil_CAF1 11030 120 - 1 AGGCUGCCAAUUUUGGAGAGCGUAUCAUUGCUUUUGCUGCUGUAGAGGGCAUCUUCUUUAGUGGCAGUUUUGCCUCCAUCUUUUGGUUGAAGAAACGUGGCCUCAUGCCCGGCCUGACAU ((((.(((((...(((((.(((((....)))..((((..(((.(((((....))))).)))..))))....)))))))....)))))........((.(((.....)))))))))..... ( -42.50) >DroMoj_CAF1 9776 120 - 1 AGGCCGCGAACUUUGGCGAGAGAAUCAUUGCGUUCGCUGCCGUGGAGGGAAUCUUCUUUAGUGGCAGCUUUGCCUCGAUCUUUUGGCUGAAGAAACGUGGUCUGAUGCCCGGUCUGACCU ((((((((..(((..((.(((..(((...(((...(((((((..((((((...))))))..)))))))..)))...)))..))).))..)))...)))))))).......((.....)). ( -45.80) >DroAna_CAF1 9682 120 - 1 AGUCAGCCAACUUUGGGGAGCGCAUCAUCGCAUUUGCUGCCGUGGAGGGUAUAUUCUUCAGCGGCAGCUUUGCCUCUAUCUUCUGGUUGAAGAAGCGAGGUUUGAUGCCCGGUCUGACCU .(((((((..(((....))).((((((........((((((((.(((((.....))))).))))))))...(((((..(((((.....)))))...))))).))))))..)).))))).. ( -50.00) >consensus AGGCAGCCAACUUUGGGGAGCGCAUCAUCGCAUUUGCUGCCGUGGAGGGCAUCUUCUUUAGCGGCAGCUUUGCCUCCAUCUUCUGGCUGAAGAAGCGUGGCCUGAUGCCCGGUCUGACCU ((((.((((....(((((.((((......))....((((((((.(((((.....))))).))))))))...))))))).....))))........((.(((.....)))))))))..... (-32.68 = -31.22 + -1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:10 2006