| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,488,027 – 7,488,144 |
| Length | 117 |
| Max. P | 0.705390 |
| Location | 7,488,027 – 7,488,144 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.54 |
| Mean single sequence MFE | -44.80 |
| Consensus MFE | -26.21 |
| Energy contribution | -27.26 |
| Covariance contribution | 1.05 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705390 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7488027 117 - 20766785 UUCUGGCGGUAGCGGAUUCCAGAUCCACUGAGAACCAAGGGAGGUGGCAGGCUACUACGUGUCGGUGGCACUGAUGAAGAACCACUUACGCUUCCGUUGCUGCCGCUGUUGCUGGAA .((..((..((((((.((((((.....))).))).(((.(((((((.(((((((((.......)))))).)))...(((.....))).))))))).)))...))))))..))..)). ( -47.30) >DroSec_CAF1 1205 117 - 1 UUCUGGCGGUAGCGGAUUCCAGAUCCACUAAGAACCAAGGGAGGUGGCAGGCUACUAAGUGUCGGUGGCACUGAUGAAGAACCACUUACGCUUCCAUUACUGCCGCUGCUGCUGGAA .((..(((((((((((((...))))).......(((......)))(((((......((((((.(((((..((.....))..))))).))))))......)))))))))))))..)). ( -50.10) >DroSim_CAF1 1207 117 - 1 UUCUGGCGGUAGCGGAUUCCAGAUCCACUAAGAACCAAGGGAGGUGGCAGGCUACUAAGUGUCGGUGGCACUGAUGAAGAACCACUUACGCUUCCAUUACUGCCGCUGCUGCUGGAA .((..(((((((((((((...))))).......(((......)))(((((......((((((.(((((..((.....))..))))).))))))......)))))))))))))..)). ( -50.10) >DroEre_CAF1 1180 117 - 1 UUUUGGCGGUAGCGGAUUCCAGAUCCACUGAGCACCAGAGGAGGUGGCAGGCUACUACGUGGCGGUGGCACCGAUGAAGAACCACUUGUGCUUCCAUUGCUGCUGCUGUUACUGGAA .....(..((((((((((...))))).(((..((((......)))).))))))))..)(((((((..(((.((((((((.((.....)).))).))))).)))..)))))))..... ( -46.00) >DroYak_CAF1 1226 117 - 1 UUUUGGCGGUAGCGGAUUCCAGAUCCACUGAGCACCAGAGGUGGUGGCAGACUACUACGUGGCGGUGGCACCGAUGAGGAACCAGUUGCGCUUCCGUUGCUGCUGCUGUUACUGGAA ((((((.(.(((.(((((...))))).)))..).))))))(((((((....)))))))(((((((..(((.(((((.(((.((....).).)))))))).)))..)))))))..... ( -42.60) >DroPer_CAF1 1100 93 - 1 UUUUGGCGGUACCGAACGCCCGAGCCACUCAGCACCAGCGGGGGCGGCAGGCUGGUCCGAGGA---------GAAGAUGUA------------CCAUUGU---UGCUGGGACUGGGA ....((((........)))).......(((((..(((((((((.(((....))).)))..((.---------.........------------)).....---))))))..))))). ( -32.70) >consensus UUCUGGCGGUAGCGGAUUCCAGAUCCACUGAGAACCAAGGGAGGUGGCAGGCUACUACGUGGCGGUGGCACUGAUGAAGAACCACUUACGCUUCCAUUGCUGCCGCUGUUACUGGAA ......(((((((((((.....))))................((((((((........(((..(((((..((.....))..)))))..)))........)))))))))))))))... (-26.21 = -27.26 + 1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:06 2006