Locus 198

Sequence ID 2R_DroMel_CAF1
Location 1,460,691 – 1,460,811
Length 120
Max. P 0.997058
window456

overview

Window 6

Location 1,460,691 – 1,460,811
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.89
Mean single sequence MFE -30.60
Consensus MFE -26.58
Energy contribution -27.90
Covariance contribution 1.32
Combinations/Pair 1.09
Mean z-score -2.23
Structure conservation index 0.87
SVM decision value 2.79
SVM RNA-class probability 0.997058
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1460691 120 + 20766785
UAACUAAUUAAUUCUCAUGCGGCGUACUUUGUGGUGGACAGUCACCAGUCUACCAUGUUUCAUUUAAUUACGGAACAAUCUGCCAAAUAGUUGCAAAAUGAGAAUAUUUGGUCGGCAAAC
..(((((...(((((((((((((.......(((((((((........)))))))))(((((..........))))).............))))))...)))))))..)))))........ ( -32.70)
>DroSec_CAF1 80802 117 + 1
UAACUAAUUAAUUCUCAUGCGGCGUACUUUGUGGUGGACAGUC---AGUCUACCAUGUUUCAUUUAAUUACGGAACAAUCUGCCAAACAGUUGCAAAAUGAGAAUAGUUGGUCGGCAAAC
..((((((((.((((((((((((.......(((((((((....---.)))))))))(((((..........))))).............))))))...))))))))))))))........ ( -35.20)
>DroSim_CAF1 79980 117 + 1
UAACUAAUUAAUUCUCAUGCGGCGUACUUUGUGGUGGACAGUC---AGUCUACCAUGUUUCAUUUAAUUACGGAACAAUCUGCCAAAUAGUUGCAAAAUGCGAAUAGUUGGUCGGCAAAC
..((((((((.(((.((((((((.......(((((((((....---.)))))))))(((((..........))))).............))))))...)).)))))))))))........ ( -30.70)
>DroEre_CAF1 91868 117 + 1
UAACUAAUUAAUUCGCAUGCGGUGUACUUUGUGGUGGACAGUC---AGUCUACCAUGUUUCAUUUAAUUACGAAACAAUCUGCCAAAUAGUUGCAAAAUGAGAAUAGUUGGUCGGCAAAC
..((((((((.(((.(((....((((((..(((((((((....---.)))))))))(((((..........)))))............)).))))..))).)))))))))))........ ( -28.50)
>DroYak_CAF1 83858 115 + 1
UAAAUAAUUAAUUCUCAUGCACCGUACUUU-UGGAGGACUGUC---AGUCUACCAUGAUUCAUUUAAUUACUGAACAACCUGC-AAAUAGUUGCAAAAUGAGAACAGUUGGUCGGCCAAC
...........((((((((((....(((((-((.(((....((---(((.....(((...)))......)))))....))).)-))).)))))))...))))))..(((((....))))) ( -25.90)
>consensus
UAACUAAUUAAUUCUCAUGCGGCGUACUUUGUGGUGGACAGUC___AGUCUACCAUGUUUCAUUUAAUUACGGAACAAUCUGCCAAAUAGUUGCAAAAUGAGAAUAGUUGGUCGGCAAAC
..((((((((.((((((((((((........((((((((........))))))))((((((..........))))))............))))))...))))))))))))))........ (-26.58 = -27.90 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:12 2006