Locus 1973

Sequence ID 2R_DroMel_CAF1
Location 7,451,133 – 7,451,234
Length 101
Max. P 0.553379
window3267

overview

Window 7

Location 7,451,133 – 7,451,234
Length 101
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 92.55
Mean single sequence MFE -18.35
Consensus MFE -14.59
Energy contribution -14.63
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.43
Structure conservation index 0.80
SVM decision value 0.04
SVM RNA-class probability 0.553379
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7451133 101 - 20766785
GCAUUGCCUUGGCAUUAUAGUCAUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCACAUGACUUUUGCCUAGUCACAACUGAUC----------------UCCAGAUCU
....((.((.((((....((((((....((((((.(((.......))).))))))..........))))))..)))).)).)).....((((----------------....)))). ( -18.24)
>DroSec_CAF1 67571 101 - 1
GCAUUGCCUUGGCAUUAUAGUCAUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCCCAUGACUUUUGCCUAGUCACAACCGAUC----------------UCCAGAUCU
....((.((.((((....((((((....((((((.(((.......))).))))))..........))))))..)))).)).)).....((((----------------....)))). ( -18.54)
>DroSim_CAF1 59718 101 - 1
GCAUUGCCUUGGCAUUAUAGUCAUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCCCAUGACUUUUGCCUAGUCACAACCGAUC----------------UCCAGAUCU
....((.((.((((....((((((....((((((.(((.......))).))))))..........))))))..)))).)).)).....((((----------------....)))). ( -18.54)
>DroEre_CAF1 67604 101 - 1
GCAUUGCCUUGGCAUUAUAGUAGUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCCCAUGACUUUUGCCUAGUCACAACCGAUC----------------UCCAGAUCU
(((((....((((((((.(((.((....))))).))))))))........)))))...........(((((.......))))).....((((----------------....)))). ( -16.00)
>DroYak_CAF1 65920 117 - 1
GCAUUGCCUUGGCAUUAUAGUCAUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCCCAUGACUUUUGCCUAGUCACAACCGAUCUCCACAUCUCCAGAUCUCCAGAUCU
....((.((.((((....((((((....((((((.(((.......))).))))))..........))))))..)))).)).)).....(((((....(((....)))....))))). ( -20.44)
>consensus
GCAUUGCCUUGGCAUUAUAGUCAUACAAGCAUUUUAAUGUCAUAAAUUUGAAUGUCCACUUCCCCAUGACUUUUGCCUAGUCACAACCGAUC________________UCCAGAUCU
....((.((.((((....((((((....((((((.(((.......))).))))))..........))))))..)))).)).)).....((((....................)))). (-14.59 = -14.63 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:50 2006