Locus 1953

Sequence ID 2R_DroMel_CAF1
Location 7,375,893 – 7,375,997
Length 104
Max. P 0.851211
window3229

overview

Window 9

Location 7,375,893 – 7,375,997
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 71.32
Mean single sequence MFE -29.38
Consensus MFE -18.06
Energy contribution -17.95
Covariance contribution -0.11
Combinations/Pair 1.39
Mean z-score -1.45
Structure conservation index 0.61
SVM decision value 0.79
SVM RNA-class probability 0.851211
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7375893 104 - 20766785
CUUGCCACCAAUGCAAGUACUA----------------CUUACCUCAACACCCACCGCCUGCUUUUCACCCUCGGAGGAGACGCCGUCGGCUCCCUCGCUGUCCUCGGUGGGGUUUCCCU
(((((.......))))).....----------------........(((.(((((((...((.((((..(....)..)))).)).(.((((......)))).)..))))))))))..... ( -29.40)
>DroVir_CAF1 12244 81 - 1
--------------------AG----------------CUUACCUCAACUUCGACGGCCUGUUUUUCGCCCUCUGACGAGACGCCAUCGGCGCCCUCGUUAUCCUCGGAGGG---CCCUU
--------------------((----------------(...((((......)).))...)))....(((((((((((((.((((...))))..))))......))))))))---).... ( -26.70)
>DroSec_CAF1 7235 104 - 1
CUUGCCACCAAGGCAAGUACUA----------------CUUACCUCAACACCCACCGCCUGCUUCUCACCCUCGGAGGAGACGCCGUCGGCUCCCUCGCUGUCCUCGGUGGGGUUUCCCU
((((((.....)))))).....----------------........(((.(((((((...((.((((..(....)..)))).)).(.((((......)))).)..))))))))))..... ( -36.30)
>DroSim_CAF1 7531 104 - 1
CUUGCCACCAAGGCAAGUACUA----------------CUUACCUCAACACCCACCGCCUGCUUCUCACCCUCGGAGGAGACGCCGUCGGCUCCCUCGCUGUCCUCGGUGGGGUUUCCCU
((((((.....)))))).....----------------........(((.(((((((...((.((((..(....)..)))).)).(.((((......)))).)..))))))))))..... ( -36.30)
>DroYak_CAF1 10395 108 - 1
------------GAAAGUGUUACUUUGCUCAAGGAGUCCUUACCUCAACACCCACCGCCUGCUUCUCACCCUCGGAGGAAACGCCGUCGGCUCCUUCGUUGUCCUCGGUGGGGUUACCCU
------------....(((..(((((......)))))...)))...(((.(((((((...((..........(((((((..((....))..)))))))..))...))))))))))..... ( -28.20)
>DroAna_CAF1 7410 101 - 1
CUUAUCCCUG---A----------------AAUGUGUCCUUACCUCCACACCCACGGCCUGCUUCUCACCCUCCGACGAUACGCCAUCAGUGCCUUCGCUGUCCUCCGUGGGGUUGCCCU
..........---.----------------..((((..........))))(((((((...((.((((.......)).))...))...(((((....)))))....)))))))........ ( -19.40)
>consensus
CUUGCCACCA__GCAAGUACUA________________CUUACCUCAACACCCACCGCCUGCUUCUCACCCUCGGAGGAGACGCCGUCGGCUCCCUCGCUGUCCUCGGUGGGGUUUCCCU
..................................................(((((((...((.((((..(....)..)))).))...((((......))))....)))))))........ (-18.06 = -17.95 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:12 2006