Locus 195

Sequence ID 2R_DroMel_CAF1
Location 1,452,945 – 1,453,061
Length 116
Max. P 0.967754
window451

overview

Window 1

Location 1,452,945 – 1,453,061
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 71.30
Mean single sequence MFE -33.55
Consensus MFE -24.70
Energy contribution -25.32
Covariance contribution 0.62
Combinations/Pair 1.12
Mean z-score -1.63
Structure conservation index 0.74
SVM decision value 1.62
SVM RNA-class probability 0.967754
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1452945 116 + 20766785
GGGUGGAGAAUUUUCUCAAUAUAAUCUGAUGAUAUCGUGGUGCAACUUUAGCAGGUUCGGCCAUGCCGACUGCGAGGUGCACUACCCGGCUGCGUGGAGGAAAGUGGUCCUUG----AAC
((((.((((....)))).....................((((((.((((.((((..(((((...)))))))))))))))))))))))(((..(..........)..)))....----... ( -37.20)
>DroSec_CAF1 71364 89 + 1
GGGUGUAGAAUUUUCUCAAUAUAAUCGGAUGAUA-CGCGGUGCAACUUAAGCAGGUUCGGCCAUGCCGACUGCUGGGUGCACUACCC------------------------------AAC
(((((((..((((.............))))..))-)..((((((.((((.((((..(((((...)))))))))))))))))))))))------------------------------... ( -30.02)
>DroSim_CAF1 70047 89 + 1
GGGUGGAGAAUUUUCUCAAUAUAAUCGGAUGAUA-CGCGGUGCAACUUAAGCAGGAUCGGCCAUGCCGACUGCUAGGUGCACUACCC------------------------------AAC
((((.((((....)))).................-...((((((.((((.((((..(((((...)))))))))))))))))))))))------------------------------... ( -32.80)
>DroYak_CAF1 75490 108 + 1
GGGUGGAGAAUUUCCUCAAUAUA-UUAUGUUAU--CGCGGUGCAACUUGAG----GUUGGCCAUACCGACUGCGAGGUGCACUACCCGGAUACCC-----AUGGCGGUCCUUACACUUAC
((((((((......)))......-.......((--(((((((((.((((.(----(((((.....)))))).)))).))))))....((....))-----...))))).....))))).. ( -34.20)
>consensus
GGGUGGAGAAUUUUCUCAAUAUAAUCGGAUGAUA_CGCGGUGCAACUUAAGCAGGUUCGGCCAUGCCGACUGCGAGGUGCACUACCC______________________________AAC
((((.(((......))).....................((((((.((((.((((..((((.....))))))))))))))))))))))................................. (-24.70 = -25.32 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:07 2006