Locus 1945

Sequence ID 2R_DroMel_CAF1
Location 7,343,087 – 7,343,187
Length 100
Max. P 0.964168
window3214

overview

Window 4

Location 7,343,087 – 7,343,187
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 96.20
Mean single sequence MFE -21.48
Consensus MFE -18.84
Energy contribution -18.44
Covariance contribution -0.40
Combinations/Pair 1.09
Mean z-score -1.78
Structure conservation index 0.88
SVM decision value 1.56
SVM RNA-class probability 0.964168
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7343087 100 - 20766785
GUAAGCGGAAACGGAAAUGGAGUCCAGAGGAGGAGAGGAAUGCAGCAAAAGGCACAAAGUGCAUGCGGUACUCAGUUUUGAUUCUUAAUAAACUAAAAUA
.((((((....))(((((.((((((......)))......(((.(((....((((...)))).))).)))))).)))))....))))............. ( -19.70)
>DroSec_CAF1 138693 100 - 1
GUAAGCGGAAACGGAAAUGGAGUCCAGAGGAGACGAGAAAUGCAGCGAAAGGCACAAAGUGCAUGCGGUACUCAGAUUUGAUUCUUAAUAAACUAAAAUA
.((((((....))..(((.(((((....(....)(((...((((.(....)((((...)))).))))...))).))))).)))))))............. ( -23.10)
>DroSim_CAF1 143159 100 - 1
GUAAGCGGAAACGGAAAUGGAGUCCAGAGGAGACGAGAAAUGCAGCGAAAGGCACAAAGUGCAUGCGGUACUCAGAUUUGAUUCUUAAUAAACUAAAAUA
.((((((....))..(((.(((((....(....)(((...((((.(....)((((...)))).))))...))).))))).)))))))............. ( -23.10)
>DroEre_CAF1 138636 100 - 1
GUAAGCGGAAGCGGAAAUAGAGUCCAGAGGAGAAGAGAAAUGCAGCGAAAGGCACAAAGUGCAUGCGGUACUCAGAUUUGAUUCUUAAUAAACUAAAAUA
....((....))......((((((.(((......(((...((((.(....)((((...)))).))))...)))...)))))))))............... ( -20.90)
>DroYak_CAF1 143175 100 - 1
GUAAGCGGAAACGGAAAUAGAGUCCAAAGGAGGAGAGAAAUGCAGCGAAAGGCACAAAGUGCAUGCGGUACUCAGAUUUGAUUCUUAAUAAACUAAAAUA
.....((....)).....((((((.(((....(((.....((((.(....)((((...)))).))))...)))...)))))))))............... ( -20.60)
>consensus
GUAAGCGGAAACGGAAAUGGAGUCCAGAGGAGAAGAGAAAUGCAGCGAAAGGCACAAAGUGCAUGCGGUACUCAGAUUUGAUUCUUAAUAAACUAAAAUA
.....((....)).....((((((.(((......(((...((((.(....)((((...)))).))))...)))...)))))))))............... (-18.84 = -18.44 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:58 2006