Locus 1943

Sequence ID 2R_DroMel_CAF1
Location 7,332,404 – 7,332,499
Length 95
Max. P 0.883243
window3212

overview

Window 2

Location 7,332,404 – 7,332,499
Length 95
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 77.09
Mean single sequence MFE -22.81
Consensus MFE -8.46
Energy contribution -8.18
Covariance contribution -0.28
Combinations/Pair 1.24
Mean z-score -2.14
Structure conservation index 0.37
SVM decision value 0.93
SVM RNA-class probability 0.883243
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7332404 95 + 20766785
UCACUUGUCAAUUGUUCAGACAGCCCAUCUACAUAGCUGACAUUCACAUGGGCUGGCACACUAUUUAUGCAUUUCUCGUAGUAAUAAUCAAGUGA------------
(((((((...(((((((...((((((((...................))))))))(((.........)))..........).)))))))))))))------------ ( -21.81)
>DroSec_CAF1 128128 95 + 1
UCGCUUGUCAAUUGUAUAGACAUCCCAUCUGAAUAUCUUACAUUCACAUGGGCUGGCUCACUACUUAUGCAUUUCCCGAAGUAACAAUCAAGUGA------------
(((((((...(((((.....((.(((((.(((((.......))))).))))).))......(((((............)))))))))))))))))------------ ( -22.00)
>DroSim_CAF1 132538 95 + 1
UCGCUUGUCAAUGAUUCAGACAGCCCAUCUGAAUAUCUUAUAUUCACAUGGGCUGGCUCACAACUUAUGCAUUUCCCGAAGUAAUAAUCAAGUGA------------
(((((((.......(((...((((((((.(((((((...))))))).))))))))((...........)).......)))........)))))))------------ ( -29.96)
>DroEre_CAF1 128087 103 + 1
GCGCUUGUCAAUUGCACAGACAUCCCAUCUACCAAACUGACAUUUGCAUGUGC----UCACUAUUUAUGCAUUUCCCAAAGUAAUAAUCAAGUGAUUUCGCGACGGG
...((((((....(((((..((.....((.........))....))..)))))----(((((..((((..((((....)))).))))...)))))......)))))) ( -17.80)
>DroYak_CAF1 132249 103 + 1
UCGCUUGUCACUUGCUCAGACAUCACAUCUACCUAACUGACACUUACAUGUGC----UCACUAUUUAUGCAUUUCCCGAUGUAAUAAUCAAGUGAUUUCGCGACGGG
((((..((((((((.....(((((.............((((((......))).----)))(.......)........)))))......))))))))...)))).... ( -22.50)
>consensus
UCGCUUGUCAAUUGUUCAGACAUCCCAUCUACAUAACUGACAUUCACAUGGGCUGGCUCACUAUUUAUGCAUUUCCCGAAGUAAUAAUCAAGUGA____________
(((((((................(((((.((.............)).)))))...............(((..........))).....)))))))............ ( -8.46 =  -8.18 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:56 2006