Locus 1940

Sequence ID 2R_DroMel_CAF1
Location 7,320,316 – 7,320,411
Length 95
Max. P 0.939362
window3206

overview

Window 6

Location 7,320,316 – 7,320,411
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 90.76
Mean single sequence MFE -29.35
Consensus MFE -26.30
Energy contribution -26.82
Covariance contribution 0.53
Combinations/Pair 1.03
Mean z-score -1.81
Structure conservation index 0.90
SVM decision value 1.28
SVM RNA-class probability 0.939362
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7320316 95 - 20766785
UACCCCAAGAGCAUUGCCCCAAUGA---GUUGCAAUAGUUCCAGGAAUGUCGUCUGAGGCGUUCACUUCGAUGGAUGCAUUCCCGGAACUUUUACGCU
.........((((((((........---...)))))((((((.((((((.(((((((((......))))...))))))))))).)))))).....))) ( -29.10)
>DroSec_CAF1 115906 95 - 1
UACACCAAGAGCAUUGCCCCAAUGA---GUUGCAAUAGUUCCAGGAAUGUCGUCUGAGGCGGUUACUUCGAUGGCUGCAUUCCCGGAACUUUUACGCU
.........((((((((........---...)))))((((((.(((((((.((((((((......)))))..))).))))))).)))))).....))) ( -29.40)
>DroSim_CAF1 120423 95 - 1
UACACCAAGAGCAUUGCCCCAAUGA---GUUGCAAUAGUUCCAGGAAUGUCGUCUGAGGCGUUCACUUCGAUGGCUGCAUUCCCGGAACUUUUACGCU
.........((((((((........---...)))))((((((.(((((((.((((((((......)))))..))).))))))).)))))).....))) ( -29.40)
>DroEre_CAF1 115887 95 - 1
UCCCCCAAGAGCAUUGCCCCAAUGA---GUUGCAAUAGUUCCUGGAAUGUCGUCUGAGGCGUUCACUUCGCUGACUGCAUUCCUGGAACUUUUACGCU
.........((((((((........---...)))))((((((.(((((((.(((...((((.......))))))).))))))).)))))).....))) ( -30.90)
>DroYak_CAF1 118902 95 - 1
GCCCCCAAGAGCAUUGCCCCAAUGA---GUUGCAAUAGUUCCUGGAAUGUCGUCUGAGGCAUUCACUUCGAUGGCUGCAUUCCCGGAACUUUUACGCU
.........((((((((........---...)))))((((((.(((((((.((((((((......)))))..))).))))))).)))))).....))) ( -29.40)
>DroAna_CAF1 110083 98 - 1
CCCACCCAGAGCAUUGCCCUGGCGGCUCGUUCCAAUAGUUCCAAGAAUGUCGUCUGAGGCAUUCACUUCGAUGGCUGCUUUCCCGGAACUUUUACGCU
........((((...((....)).))))((......((((((..(((.((((((.((((......))))))))))....)))..))))))...))... ( -27.90)
>consensus
UACACCAAGAGCAUUGCCCCAAUGA___GUUGCAAUAGUUCCAGGAAUGUCGUCUGAGGCGUUCACUUCGAUGGCUGCAUUCCCGGAACUUUUACGCU
.........((((((((..............)))))((((((.(((((((.((((((((......)))))..))).))))))).)))))).....))) (-26.30 = -26.82 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:50 2006