| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,311,663 – 7,311,770 |
| Length | 107 |
| Max. P | 0.752541 |
| Location | 7,311,663 – 7,311,770 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.53 |
| Mean single sequence MFE | -20.42 |
| Consensus MFE | -15.32 |
| Energy contribution | -15.48 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.752541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7311663 107 + 20766785 CCGAGACCAAGCCGGCGACGAGACCCAG---ACGAAGAGGUGCUAAUAAUGUGGGAAAUAUUUAGCACCAUCAUUACAAACAUCAUUAAAAUAUAAAUAGAUGUGUUUAA ............((....))......((---((...((((((((((..((((.....)))))))))))).)).......((((((((........))).))))))))).. ( -20.70) >DroPse_CAF1 86684 106 + 1 ----GACCAGCGCCGUGCUGCUUCCCAGACGACGAGGAGGUGCUAAUAAUGUGGGAAAUAUUUAGCACCAUCAUUACAAACAUCAUUAAAGUAUAAAUAGAUGUGUUUAA ----..((..((.(((.(((.....)))))).)).)).((((((((..((((.....))))))))))))..........((((((((........))).)))))...... ( -23.50) >DroEre_CAF1 107484 97 + 1 CCGAAA---AGC-------GAGACCCAG---ACGAAGAGGUGCUAAUAAUGUGGGAAAUAUUUAGCACCAUCAUUACAAACAUCAUUAAAAUAUAAAUAGAUGUGUUUAA ......---...-------.......((---((...((((((((((..((((.....)))))))))))).)).......((((((((........))).))))))))).. ( -18.60) >DroWil_CAF1 139946 91 + 1 --------------UCAACUAAACCAAG---AAG--AAGGUGCUAAUAAUGUGGGAAAUAUUUAGCACCAUCAUUACAAACAUCAUUAAAAACUAAAUAGAUAUAGUUAA --------------..(((((.......---..(--(.((((((((..((((.....)))))))))))).)).........((((((........))).))).))))).. ( -16.20) >DroAna_CAF1 100984 105 + 1 CUGAAACUCAGACAUC--CGAGACCCAG---ACGAAGAGGUGCUAAUAAUGUGGGAAAUAUUUAGCACCAUCAUUACAAACAUCAUUAAAAUAUAAAUAGAUGUGUUUAA (((...(((.(....)--.)))...)))---.....((((((((((..((((.....)))))))))))).)).......((((((((........))).)))))...... ( -20.80) >DroPer_CAF1 79096 106 + 1 ----GACCAGCGCCGUGCUGCUUCCCAGACGACGAAGAGGUGCUAAUAAUGUGGGAAAUAUUUAGCACCAUCAUUACAAACAUCAUUAAAGUAUAAAUAGAUGUGUUUAA ----......((.(((.(((.....)))))).))..((((((((((..((((.....)))))))))))).)).......((((((((........))).)))))...... ( -22.70) >consensus ____GACCAAGCC_GCG_CGAGACCCAG___ACGAAGAGGUGCUAAUAAUGUGGGAAAUAUUUAGCACCAUCAUUACAAACAUCAUUAAAAUAUAAAUAGAUGUGUUUAA ......................................((((((((..((((.....))))))))))))..........((((((((........))).)))))...... (-15.32 = -15.48 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:48 2006