Locus 1923

Sequence ID 2R_DroMel_CAF1
Location 7,246,974 – 7,247,080
Length 106
Max. P 0.596571
window3178

overview

Window 8

Location 7,246,974 – 7,247,080
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.72
Mean single sequence MFE -16.37
Consensus MFE -10.13
Energy contribution -10.60
Covariance contribution 0.47
Combinations/Pair 1.10
Mean z-score -2.66
Structure conservation index 0.62
SVM decision value 0.13
SVM RNA-class probability 0.596571
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7246974 106 - 20766785
CGACCCAAUCAAAAACACAUUAAAACC-AAAAGGCCGACA-------------AAUAAACAACAACAAUUUGUCAAAGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU
...........................-....(((.((((-------------(((...........))))))).(((((((.............)))))))........)))....... ( -17.22)
>DroVir_CAF1 66602 104 - 1
---CCCAAUCAAAAACGCAUCAAAAUCGAAAAGGCCGCCA-------------AAUAAACAACAACAAUUUGUCAAUGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU
---...((((((....(((((.......(((.(((.((((-------------.....((((.......)))).....)))).............))).))).....)))))..)))))) ( -16.24)
>DroGri_CAF1 52440 104 - 1
--ACCCAAUCAAAAACACAUCAAAAUC-AAAAGGCCGCCA-------------AAUAAACAACAACAAUUUGUCAAUGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU
--.........................-........((((-------------.....((((.......)))).....))))......((((((.(.(((((....))))).).)))))) ( -13.20)
>DroWil_CAF1 61244 85 - 1
GGACCCAAUCAAAAACGCAUUAAAAUC-AA----------------------------------ACAAUUUGUCAAAGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU
......((((((....(((((.....(-((----------------------------------.....)))...(((((((.............))))))).....)))))..)))))) ( -12.62)
>DroMoj_CAF1 63894 117 - 1
--GUCCAAUCAAAAACGCAUCAAAAUC-AAAAGACCGCCAAAUACCAAUACCAAAUAAACAACAACAAUUUGUCAAUGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU
--....((((((....(((((......-.......................(((((...........))))).....(((((.............))))).......)))))..)))))) ( -14.32)
>DroAna_CAF1 39960 107 - 1
CGACCCAAUCAAAAACGCAUUAAAGCCCAAAGGGCCGACA-------------AAUAAACAACGACAAUUUGUCAAAGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU
......((((((....(((((...((((...)))).((((-------------(((...........))))))).(((((((.............))))))).....)))))..)))))) ( -24.62)
>consensus
__ACCCAAUCAAAAACGCAUCAAAAUC_AAAAGGCCGCCA_____________AAUAAACAACAACAAUUUGUCAAAGUGGCAACAACAAUCAACGCCAUUUAAUUAGAUGCCAUUGAUU
......((((((....(((((........................................((((....))))....(((((.............))))).......)))))..)))))) (-10.13 = -10.60 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:25 2006