Locus 1920

Sequence ID 2R_DroMel_CAF1
Location 7,227,381 – 7,227,476
Length 95
Max. P 0.725667
window3175

overview

Window 5

Location 7,227,381 – 7,227,476
Length 95
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 78.03
Mean single sequence MFE -20.36
Consensus MFE -12.22
Energy contribution -13.42
Covariance contribution 1.20
Combinations/Pair 1.06
Mean z-score -1.66
Structure conservation index 0.60
SVM decision value 0.41
SVM RNA-class probability 0.725667
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7227381 95 - 20766785
AAAACUGGGUCUGCCGGCCAGAUAAUGAUCUCUGGGUGGCGUCCACCUGCUCCACUUUAUUA--AA---AAAAAAAAGGCUGAAACUAGUCACCCACCCA----
.....(((((..((((.(((((........))))).))))......................--..---........(((((....))))))))))....---- ( -25.60)
>DroSec_CAF1 22864 97 - 1
AAAACUGGGUCUCCCGGCCAGAUAAUGAUCUCUGCGUGGCGUCCACCUGCUCCACUUUAUUAUAAA---AAAAAAAAUGCCGAAACUAGUCACCCACCCA----
.....(((((((..((((((((........)))).((((.((......)).))))...........---.........)))).....))..)))))....---- ( -18.90)
>DroSim_CAF1 23631 97 - 1
AAAACUGGGUCUCCCGGCCAGAUAAUGAUCUCUGGGUGGCGUCCACCUGCUCCACUUUAUUAUAAA---AACAAAAAAGCCGAAACUAGUCACCCACCCA----
.....(((((((..((((((((........))))(((((.((......)).)))))..........---.........)))).....))..)))))....---- ( -20.60)
>DroEre_CAF1 22662 81 - 1
AAAACUGGGUCUCCCGGCCAGAUAAUGAUCUCUGGGUGGCGUCCACCUGCUCCACGU-----------------AAAAA--AAAAGUAGUCACCCACCCA----
....(((((...)))))..((((....))))..((((((.((....(((((......-----------------.....--...)))))..)))))))).---- ( -20.74)
>DroYak_CAF1 24021 98 - 1
AAAACUGGGUCUCCCGGCCAGAUAAUGAUCUCUGGGUGGCGUCCACCUGCUCCACUUUAUUAAAAACAAAACAAAAAAG--AAAACUAGUCUCCCACCCA----
...(((((.(((.....(((((........)))))((((.((......)).))))......................))--)...)))))..........---- ( -17.90)
>DroPer_CAF1 18834 80 - 1
GAAUGUGGGUCACCCCGCUAGAUAAUGAUCUAUGCG---CCAGCACCUGCCCCACUUUC---------------------GAAAACAAGUCACCCACCCACCCA
(((.(((((......((((((((....))))).)))---...((....))))))).)))---------------------........................ ( -18.40)
>consensus
AAAACUGGGUCUCCCGGCCAGAUAAUGAUCUCUGGGUGGCGUCCACCUGCUCCACUUUAUUA__AA___AA_AAAAAAG__AAAACUAGUCACCCACCCA____
.....(((((.......(((((........)))))((((.((......)).))))........................................))))).... (-12.22 = -13.42 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:22 2006